RnoEX6040750 @ rn6
Exon Skipping
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94280265-94281070:+
Coord C1 exon
chr9:94280265-94280321
Coord A exon
chr9:94280413-94280602
Coord C2 exon
chr9:94280971-94281070
Length
190 bp
Sequences
Splice sites
3' ss Seq
ATGACGCCGTTTCTGCCTAGGTC
3' ss Score
7.51
5' ss Seq
CGGGTACGA
5' ss Score
8.06
Exon sequences
Seq C1 exon
GACCTGGACGCCCTAGGCCTCAAGCCTCGGTCTTCCAGGACCCACCACCAGAGCCAG
Seq A exon
GTCCATGTGGAGAAAGACGCCAAAGCGTTGCCAACACGACCCGGGCTCACGGCCGCATAGTCGGTGGCAGCACGGCTCCATTGGGAGCCTGGCCTTGGCTAGTGAGGCTGCAACTTGGGGGCCTGCCTCTGTGCGGGGGCGTTCTGGTGGCAGCGTCCTGGGTGCTCACGGCTGCACACTGCTTCGCCGG
Seq C2 exon
TGCCTCGAATGAGCTTCTGTGGACTGTGATGCTAGCCGAGGGACCCCAGGGGGAGCAAGCAGAGGAAGTGCAGGTGAATCGTATCTTGCCCCACCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.312 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.3=68.8)
C2:
PF0008921=Trypsin=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGACGCCCTAGGC
R:
AGGGTGGGGCAAGATACGATT
Band lengths:
154-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]