RnoEX6043933 @ rn6
Exon Skipping
Gene
ENSRNOG00000025862 | Zp3r
Description
zona pellucida 3 receptor [Source:RGD Symbol;Acc:727846]
Coordinates
chr13:47294390-47302844:-
Coord C1 exon
chr13:47302662-47302844
Coord A exon
chr13:47296172-47296369
Coord C2 exon
chr13:47294390-47294590
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATGATTTTTTTCCTGGCCAGATG
3' ss Score
8.52
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAATCGTCTGTCATCAGCCACAGATTCCAAAGGGAGAGTTGGTCCCTGGATTTCGACATTTCCATACTTACAAAGACGCTCTTGAGATCAGATGCAAGAAGGGCTTTGCTCTCAGAGGCAACAGCGTGATCCACTGTGAGGCTAATGGCGAGTGGTTTCCTTCGGTCCCCACCTGTGAACCCA
Seq A exon
ATGGTTGTATTGATATACCAGATATTTCCTATGCTTCCTGGGACGGAAATAGGTTTCCATTAGAAAATACTGCAGTATTTGAAATTGGGACCAAATTGAAATACCGGTGCAAGCCTGGCTATCGAGCAAATGTTCACGATGTTCAGATTGTGACTTGTCAGGAAAATCTGACCTGGTCATCTCCTAGTGGATGCGAAA
Seq C2 exon
GGGTATGTTGCCCAACACCAAATATGGAGAAAATCAAAATCGTAAGTGAAAGGAGAGATTTCACTGGCACATGTGTCTATGCCTATGGGGACTACGTTTTCTATATTTGTAGTGAAGGTACTTACCCTATGACTACGGATGGAAGGAGTTCGTGTCAAGCAGATGGAAAGTGGGACCCTGCAATACCATCATGTGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025862-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3)
A:
PF0008415=Sushi=PU(95.5=95.5)
C2:
PF0008415=Sushi=PD(3.0=2.9),PF0008415=Sushi=WD(100=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGAGGCTAATGGCGAG
R:
TGATGGTATTGCAGGGTCCCA
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]