RnoEX6044502 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:56992873-57003109:-
Coord C1 exon
chr13:57002903-57003109
Coord A exon
chr13:57002165-57002338
Coord C2 exon
chr13:56992873-56993049
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGTGTCTTTTTCAGGAA
3' ss Score
12.58
5' ss Seq
TAAGTACAT
5' ss Score
-2.26
Exon sequences
Seq C1 exon
AAAAAATTCCATGTTCCCAGCCCCCTAAAATTGAACATGGATCTATTAAGTCGCCCAGGTCCTCAGAAGAGAGAGATTTAATTGAGTCCAGCAGTTATGAACACGGAACTACATTCAGCTATGTCTGTGATGATGGATTCAGGATATCTGAAGAAAATAGGGTAACCTGCAACATGGGAAAATGGAGCTCTCTGCCTCGTTGTGTTG
Seq A exon
GAATACCTTGTGGACCCCCACCTTCAATTCCTCTTGGTATTGTTTCTCATGAACTAGAAAGTTACCAATATGGAGAGGAGGTTACATACAATTGTTCTGAAGGCTTTGGAATTGATGGACCAGCATTTATTAAATGTGTAGGAGGACAGTGGTCTGAACCACCCAAATGCATAA
Seq C2 exon
AAACTGATTGTGACAACTTGCCCACATTTGAAATTGCCAAACCGACAGAAAAGAAAAAAAAATCATACAGGTCAGGAGAACAAGTGACATTCAGATGTCCACCTCCGTATCGAATGGATGGCTCTGACATTGTCACATGTGTTAATACGAAGTGGATTGGACAGCCGGTATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-'28-37,'28-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.4)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=91.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTCCATGTTCCCAGCCCC
R:
TGGCAATTTCAAATGTGGGCA
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]