RnoEX6046331 @ rn6
Exon Skipping
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13186750-13187280:-
Coord C1 exon
chr10:13187254-13187280
Coord A exon
chr10:13187136-13187168
Coord C2 exon
chr10:13186750-13186918
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCTCTACTCCTCCCCCACAGGCC
3' ss Score
11.56
5' ss Seq
CAAGTGACT
5' ss Score
1.62
Exon sequences
Seq C1 exon
GATCGCGTGAAGAAAACCAGGCGGCAG
Seq A exon
GCCTCAAGAATACAGACATCAAGCTTCTCTCAA
Seq C2 exon
TGCCGTGTGGCCGCCGGAATGACATTCGGTCCCGGATAGTGGGCGGGATAGAATCCGTGCGAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGTTTGAGGAAGTTCCACCGCTGCGGAGGGAGCCTTCTCAGCCACCGATGGGTGCTTACTGCTGCACACTGCTTTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=77.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAACCAGGCGGCAG
R:
GGTGGAACTTCCTCAAACGCA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]