RnoEX6046624 @ rn6
Exon Skipping
Gene
ENSRNOG00000018611 | Tpsb2
Description
tryptase beta 2 [Source:RGD Symbol;Acc:3065]
Coordinates
chr10:14723405-14724600:+
Coord C1 exon
chr10:14723405-14723670
Coord A exon
chr10:14723812-14723975
Coord C2 exon
chr10:14724052-14724600
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTCTCTCACCCCAGAGC
3' ss Score
9.69
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACATCAAAAGCCCAGAGCTCTTCCGTGTACAGCTTCGTGAGCAGTATCTATACTATGCGGACCAGCTACTGACTGTGAACCGGACCGTTGTGCACCCCCACTACTACACAGTCGAGGATGGGGCAGACATTGCCCTGCTGGAGCTTGAGAACCCTGTGAATGTCTCCACCCATATCCACCCCATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCTCGGGGACTTCTTGCTGGGTAACAGGCTGGGGCGACATTGATAGTGACG
Seq A exon
AGCCTCTCCTGCCACCTTATCCTCTGAAGCAAGTGAAGGTCCCCATTGTGGAAAACAGCCTGTGTGATCGGAAGTACCACACTGGCCTCTACACAGGAGATGATGTTCCCATTGTCCAGGATGGCATGCTGTGTGCTGGAAATACCAGGAGCGACTCCTGCCAG
Seq C2 exon
GGAGACTCAGGGGGCCCACTGGTCTGCAAAGTGAAGGGTACCTGGCTGCAAGCAGGAGTGGTCAGCTGGGGCGAGGGCTGCGCAGAGGCCAATCGTCCTGGCATTTACACCCGGGTGACGTACTACCTGGACTGGATTCACCGCTATGTCCCTCAGCGTTCCTGAGACCCATCCAGGGTCAGGGAAGAACCAGGCACCTGCTGTCTTTAACTCACTGCTTCCTGGCCAGATGGAACCCTGGCCTTCTTTGTACTCTGTCTCCCCTGTCTTCCGGGTGTCCCTCTGAGCCCCCACTTTGTTCCACCTTGAGTCCCTCGCCACTCCTGTCCCCTCTGCCTCCCACCACACACAGCTGCACTGTGCGGCTCCCTCTTTTCTGTGGCTCATTAAAGTATGTGAAAATTTTGCTCCAAGAGTTCAAGGTCATCCTTGTCTATGTATTGAGTTTGAGGCCAGTCTGGGATATGTGAGACACTATCCCAAGACCATAAAAATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018611-'4-3,'4-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.6=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCACCCATATCCACCC
R:
AGGGACATAGCGGTGAATCCA
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]