RnoEX6053180 @ rn6
Exon Skipping
Gene
ENSRNOG00000013679 | Sema4d
Description
semaphorin 4D [Source:RGD Symbol;Acc:1310554]
Coordinates
chr17:13488376-13516561:+
Coord C1 exon
chr17:13488376-13488446
Coord A exon
chr17:13507849-13507916
Coord C2 exon
chr17:13516246-13516561
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCATTCATTTCAGAGA
3' ss Score
10.5
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ACTCCCTACTGAGTCCTGCGTGTGAGCGGAGGCAGAGGGGCCCGTCCACTGATAGGCTGATTGGGTTTAAG
Seq A exon
AGATGTCTTCCTGAAGCTTCCCTTCTAGAGGTGCCAGGAACAAACCCCAGAGACTCAACACGGCACAG
Seq C2 exon
GTCGGAAGGGAACAACGCCTTTGGCATGAGGTTGTAAAAGTGGCCTTTGCTAACCTGACATGTGGGGACTCAAGAACCCCACTCCCTATGGGCTCCAGTCTGTGCTGCTGGCCCCAGCTCTGGGGCTCTGAGAGGTTCCTGCTGCTACACCACAGCAGCCCACTGCCATTCATGTGTGTCTGTTGCTGAAGGCCTCGGTGGCCCCTGCCCATGAAGATGTGTGCCCCCGTCAGGGGGCTGTTCTTGGCCCTGGTGGCTGTGTGGAGGACCGCGGTGGCATTCGCCCCTGTGCCTCGGATCACCTGGGAGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013679-'6-2,'6-1,20-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCCACTGATAGGCTGAT
R:
TGTAGCAGCAGGAACCTCTCA
Band lengths:
180-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]