RnoEX6055597 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50170983-50173964:+
Coord C1 exon
chr16:50170983-50171158
Coord A exon
chr16:50172222-50172317
Coord C2 exon
chr16:50173825-50173964
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCATGAAATTTTCTTTCAGAAT
3' ss Score
8.08
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GATTCCCTATCCAGACGTGTGGCGTATATATGGCGGGATTCTTAATCTGTCAGAGATTACAAACAAAACGCCTTTCTCAAGTATAAAGGAGCTTATTATTCATCAGAAATACAAAATGTCAGAAGGCAGTTACGATATTGCCTTAATAAAGCTTCAGACACCGTTGAATTATACTG
Seq A exon
AATTCCAAAAACCAATATGCCTGCCTTCCAAAGCTGACACAAATACAATTTATACCAACTGCTGGGTGACTGGATGGGGCTACACAAAGGAACGAG
Seq C2 exon
GTGAGACCCAAAATATTCTACAAAAGGCAACTATTCCCTTGGTACCAAATGAAGAATGCCAGAAAAAATATAGAGATTATGTTATAACCAAGCAGATGATCTGTGCTGGCTACAAAGAAGGTGGAATAGATGCTTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.5=100)
A:
PF0008921=Trypsin=FE(13.9=100)
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCAGTTACGATATTGCCT
R:
CCACCTTCTTTGTAGCCAGCA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]