RnoEX6055986 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74643453-74646878:-
Coord C1 exon
chr16:74646825-74646878
Coord A exon
chr16:74645135-74645191
Coord C2 exon
chr16:74643453-74643506
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATACTTTTATAATCCCTTAGTAT
3' ss Score
5.3
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTATGACGGAAATGAAGAGACAACCACGTTCACTAACGGAAGTAGCATTGACAG
Seq A exon
TATGTCGTATCAAGATGACATGAAATCGTCAAATTGCATGGACCCCACCAGTGAAAA
Seq C2 exon
AAGATATGGAAATGATTCGTCATTATACACCATTGACGGAACTTTGAACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'8-6,'8-5,9-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.950 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACGGAAATGAAGAGACAACCA
R:
CCGTTGTTCAAAGTTCCGTCA
Band lengths:
108-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]