RnoEX6055987 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74638017-74645191:-
Coord C1 exon
chr16:74645135-74645191
Coord A exon
chr16:74643453-74643506
Coord C2 exon
chr16:74638017-74638064
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTACTTTTCAATATTTTAGAAG
3' ss Score
7.46
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TATGTCGTATCAAGATGACATGAAATCGTCAAATTGCATGGACCCCACCAGTGAAAA
Seq A exon
AAGATATGGAAATGATTCGTCATTATACACCATTGACGGAACTTTGAACAACGG
Seq C2 exon
CACAACCCTGTATGAAATGAATTCCTTGAGTGAATTATCGAAAGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'9-9,'9-6,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCAAGATGACATGAAATCGTCA
R:
ACTTCTTTCGATAATTCACTCAAGGA
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]