RnoEX6055988 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74633491-74638064:-
Coord C1 exon
chr16:74638017-74638064
Coord A exon
chr16:74635247-74635297
Coord C2 exon
chr16:74633491-74633541
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTACACCGTCTAGATA
3' ss Score
5.44
5' ss Seq
ACTGTGAGA
5' ss Score
2.78
Exon sequences
Seq C1 exon
CACAACCCTGTATGAAATGAATTCCTTGAGTGAATTATCGAAAGAAGT
Seq A exon
ATACCTGAACGATTCTGCTTTGCTACGTGGTAAAGAAGCTGCCAGCGAACT
Seq C2 exon
CCAAGTCTCAAGTACAATGAAAACACAATCATCTGTGTCGACCAGCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'12-11,'12-10,13-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACCCTGTATGAAATGAATTCCT
R:
GCTGGTCGACACAGATGATTGT
Band lengths:
94-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]