RnoEX6058477 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27540212-27543942:-
Coord C1 exon
chr18:27543853-27543942
Coord A exon
chr18:27541434-27541532
Coord C2 exon
chr18:27540212-27540361
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCAGGTTTTTCTTGTGCAGATA
3' ss Score
8.2
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCACAGCTTCTCTGTAGTACTCCAAATGCTTTGGATCATGGCCACAGAAGGAAGGATGCAAAGTGTAGCACATCTGCAAATAAAGAAAAT
Seq A exon
ATAAACACCAGTTTTAAAACATTGGAATGGGAGGCACCTAGGACCCCGAGGCTTCAAAAAAAGCCTGGCGATCCTCTGGCTTCTCCTCTCTGTGAGCTG
Seq C2 exon
GAAAATGGAATCTTGCTGGAAAGTGAAATGAAGAATCTGGGCAGTCCCATTACTACAGTTCCAAAACTGAGTAAAAATCTCAAGCTAGAAGACCAAGAAGGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGAAGACCAAGATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.788 C2=0.570
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(16.8=100)
A:
PF066178=M-inducer_phosp=FE(18.5=100)
C2:
PF066178=M-inducer_phosp=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGAAGGAAGGATGCAA
R:
AGGGAACACTCCATTGGGTCT
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]