RnoEX6058858 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53109865-53113427:-
Coord C1 exon
chr18:53113302-53113427
Coord A exon
chr18:53112559-53112711
Coord C2 exon
chr18:53109865-53109933
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACCAATTTCTCTCCATGTAGACA
3' ss Score
8.08
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATATTGATGAGTGCTTCGCCCATCCCGGCGTGTGCGGACCTGGAACCTGCTACAACACTCTGGGGAATTACACTTGCATTTGCCCGCCCGAGTACATGCAAGTCAACGGAGGACACAACTGCATGG
Seq A exon
ACATGAGGAAAAGCTTTTGCTACAGAAGCTACAACGGGACCACTTGTGAAAACGAGTTGCCTTTTAATGTGACAAAGAGGATGTGCTGCTGCACGTACAACGTCGGCAAGGCCTGGAACAAACCTTGTGAGCCATGCCCTACGCCGGGGACAG
Seq C2 exon
CTGACTTTAAAACTATATGTGGAAATATTCCCGGATTCACCTTTGACATTCACACAGGAAAAGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'35-40,'35-39,36-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=73.1)
C2:
PF0068312=TB=PD(11.4=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGATGAGTGCTTCGCCCA
R:
CAACAGCTTTTCCTGTGTGAATGT
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]