RnoEX6058864 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53103259-53105118:-
Coord C1 exon
chr18:53105002-53105118
Coord A exon
chr18:53103788-53103916
Coord C2 exon
chr18:53103259-53103378
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCACTCCTCTCTGCTTACAGACA
3' ss Score
10.03
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ATGTTGATGAGTGTGAGAGGCACCCATGTGGAAACGGGACTTGTAAGAACACTGTCGGGTCCTACAACTGTCTGTGCTACCCTGGCTTCGAGCTCACCCACAACAACGACTGCCTAG
Seq A exon
ACATAGACGAGTGCAGCTCGTTCTTTGGCCAGGTGTGCAGAAACGGGCGGTGCTTCAATGAAATCGGCTCCTTCAAATGTCTGTGCAACGAGGGCTACGAACTTACTCCGGACGGCAAGAACTGTATCG
Seq C2 exon
ATACTAATGAGTGTGTCGCACTTCCTGGCTCCTGCTCCCCTGGGACCTGTCAGAATTTGGAGGGATCCTTCAGGTGCATCTGTCCCCCCGGATATGAAGTGAAAAGCGAAAATTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'41-46,'41-45,42-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGATGAGTGTGAGAGGCA
R:
TGCAATTTTCGCTTTTCACTTCA
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]