RnoEX6064436 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39151055-39152776:+
Coord C1 exon
chr12:39151055-39151734
Coord A exon
chr12:39152366-39152529
Coord C2 exon
chr12:39152615-39152776
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTGGCTGACTCCCAGGTG
3' ss Score
7.33
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GAGAAGAGGAAGGTGAAGATGCGCCGGAAACGGCGGCTTCCCAACAAGGAGTTGAGCAAAGAGCTAAGCAAGGAGCTCAACCACGAGATCCAAAAGACAGAGAGCACCTTAGCCCACGAGAACCACCAGCCTATCAAGTCAGAGCCCGAGAGTGAAAACGAGGAGCCAAAGAGGCCCTTAAGCCACTGCGAGCGCCCGCACCGCTTCAGCAAAGGGCTCAACGGCACTCCTCGGGAGCTGCGGCACTCACTGGGACCTGGGCTTCGCAGCCCACCTCGTGTCATCTCCCGGCCCCCGCCCTCTACATCCCCACCCAAGTGCATCCAGATGGAGCGTCACGTGATCCGGCCACCACCCATCAGCCCCCCACCTGACTCGCTGCCCCTGGATGATGGAGCAGCCCATGTCATGCATAGGGAGGTGTGGATGGCAGTCTTCAGCTACCTCAGCCACCAAGACCTGTGTGTCTGCATGCGGGTCTGCAGGACCTGGAACCGCTG
Seq A exon
GTGCTGCGATAAGCGGTTGTGGACCCGCATCGACCTGAACCACTGCAAGTCCATCACTCCCCTGATGCTGAGCGGCATCATCCGGCGGCAGCCGGTCTCCCTGGATCTCAGCTGGACCAACATCTCCAAGAAGCAGCTGAGCTGGCTCATCAACCGGTTGCCTG
Seq C2 exon
GGCTCCGAGACTTGGTGCTGTCAGGCTGCTCATGGATCGCTGTCTCAGCCCTCTGTAGCTCCAGTTGTCCACTGCTCCGGACCCTGGATGTCCAGTGGGTAGAAGGACTAAAGGATGCCCAGATGCGGGATCTCCTGTCTCCACCCACAGACAACAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-'33-25,'33-24,34-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0064628=F-box=PU(77.6=19.8)
A:
PF0064628=F-box=PD(20.7=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGTCATGCATAGGGAG
R:
GAGACAGGAGATCCCGCATCT
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]