RnoINT0000587 @ rn6
Intron Retention
Gene
ENSRNOG00000051782 | AABR07004061.1
Description
NA
Coordinates
chr1:123585175-123586368:-
Coord C1 exon
chr1:123586231-123586368
Coord A exon
chr1:123585237-123586230
Coord C2 exon
chr1:123585175-123585236
Length
994 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ACCAATTCTGTACATGGCAGAAA
3' ss Score
4.66
Exon sequences
Seq C1 exon
AACAACACTCATGTATGCAGTGCAATGGGATTCTGAAGTCATTGTTGAGCAGTTACTGGAGAAAGGAATTGATCACTCCTTAAAGGACTCATTTGGATGGAGTGCACTTCAGTATGCAGTGGCAGGAAAACGCAAAGT
Seq A exon
GTAAGTATATGTGTCACAATGCTAATTAACACTAAATGTAAGCATGAAATATTTACTAATGTATTTTATACAAGGTGAGACTACATTATTTACATTCTTTGGAAACAGAAACATTTTAGTCAACTGCACTTGCCAAAGAGTGTGCAGAGGGACAGATTATTCTGAAGTAGCAATGAGTGCAGGAGACATTATATATCAGGATTGATTTATGGTGATTCTTGGAATCACATTAAGGGATCTGAAGGTAATAGGCATATATACTAGCATTGAAATTCACCTCTAGCCTGTGTTCACTATATTTAATAAGTCCCACTGCATCTCATCAGTATGTTTATAAATGTATTAACAATGGTTTTGTCTTCCATATAAGTTGAAGGTAAGCACAGAGACTCAGTATCAGTTTGACAATTCTCACCTGGCTCAGTTCCTTGTTGGCTAAAGGAAGAAGGGCAATAGAGCAACCTATGTTTAGAGTTCTCACTTTGGGCTGACTCTAGTTCAGTAGTTACAATGTCTGGTACAGCAGAATTTGATAATAGGCCCATTGATGAATTACACGGTGGATTTCACTTAGGATTCTAATCAGTTCAAGATTGAGAAGCCAATTATATACTTTTTAAAATACGTATGTACATATTTTCATGTGATGAAATCTTCATAGCCACCTGGATAAATAAAATAATAAAATCCCAACTTTTGAAAGCCTAAATTGGGAGTCTAAGAGAAACACTTCCAGAAAAGGAGACTTGGGATGCCTTTTGATATCAGGGTACTTTCAATAATGTCAAGATAATCTAGATTCACGAATCCTCTTCTCTTTTTCAATGAGAAACTTTGTAAAAAACTGTTTAGAGCTTATAAATTTGAAGGGTATGGCAAAATCTTAAATAAATCTTTTACTTAAAAAATTCTTAAGAATTTAATCTATAGCTAAAAGGTTTCTTTTTAGTCTTAAAATAGTAACATTATCTACCACCAATTCTGTACATGGCAG
Seq C2 exon
AAAGGATATAATTTTGGACTATGAGGACTCACTCCTCTTAAGTCAACACAGTATCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051782:ENSRNOT00000090893:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACTCATGTATGCAGTGCA
R:
TGTGAAGATACTGTGTTGACTTAAGA
Band lengths:
198-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]