RnoINT0000694 @ rn6
Intron Retention
Gene
ENSRNOG00000014946 | AABR07005588.1
Description
NA
Coordinates
chr1:189457583-189460844:-
Coord C1 exon
chr1:189460592-189460844
Coord A exon
chr1:189459596-189460591
Coord C2 exon
chr1:189457583-189459595
Length
996 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTCCTATTTCTGTTTCAGGAA
3' ss Score
12.41
Exon sequences
Seq C1 exon
TTAGAACCTGAGAAATTAGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAAAAGAAGACACGGGTTATTCTGCGAATGTTACCTGTCTCAGGTACATGTAAAGCATTTTTAGAAGATATGAAAAAATATGCAGAAACATTTCTGGAACCCTGGTTTAAAGCCCCAAACAAAGGGACATTTCAGATTGTATACAAATCTCGAAATAACAGCCATATGAATAGAGAAGAAGTCATTAAAGAGTTGGCAG
Seq A exon
GTAAGTTCTCTGAGTAATCTTATATAGCCTGCTCTGGTTAAAACTTAGGCTTAAAAATGTTTGTTTAGTACATTTTTTCTTCAGCTTATATATCAGCTCTCACTAATATGGCATGTGAGGTAGATTCTCTGGTAGAAGTCTTTGCAAATCAAAATTGAATATTTGGGAATATACAGTGGTCTGTCCATACCCATGGGTGATTGTCATTAGATGCCCCAGGGATGCCAAACCTGTGAGCGCTCAGGTAAGTCTTACATAAAATTGGCTGTTTTGGTGTGATATTTGCATATAACCTACACAGGTTCTCTTCTATATTTATATCATTTTTAGATTATTTAGAATACTAAGTCTGTTGAAACCTCTGAAATAGTCGTCTTGTTTAGAGATAATGACAGTTAAAATCAGTCTATTCTTGTTAAGTGGAGATATCCTTTTCTTTCTGAAGAATTTTGATTCACACTTACTTGGGTTTGCACATGAGTGCAGTGCCCACAGAGCCAGAAAAGGCTGCTGTTTCCTTTTAAGCTAGGGCCAACAGGTGATTGTTTAGCTTCTCAACATGAATGCTGGGAACAGGTAGGTCTTCTGCAAGAGCCGTGCATGCATTTCCACAGAGTCATCTCTGTACTCTGCCAACTGCGCTCTTATTAAATGTGTCAAGTTTCATTCATATTTATTAAAAGCATTGATAGAGCTGCATATCCATGCCCTTGATCCCACAGTTGGGAGGCAGAGACAGGCTGTTGTTATGAATTCCAGGCCAACCTGGTCTACATAGTGAGTTCCAGGACAGTCAGGGATACATAGAGAGCCTGTCTTGAAATAAACAAAACAAAAAAGTATTCATGGAATTTGATTGACAGTCACAAAGAACAAGGACTTTTTATAAACCTAGTTTTAACAAATCCTGTCTAGTAAGGGATGAAAGCCTCGTTTGACTCCCATCAGGCTTCATGATACCTTCCTTCTTAGCTCATTCTCCTATTTCTGTTTCAG
Seq C2 exon
GAATAGTAGGCAGCCTCAATTCAGAAAACAAAGTGGATCTCACTAATCCAGAATACACGGTGGTAGTAGAAATCATCAAAGCTGTGTGTTGCCTGAGTGTTGTGAAAGATTATGTGCTGTTCCGAAAATACAACCTCCAAGAAGTAGTGAAGAGTGCAAAGGACTCACGGCCTCCCCCAAAGCTGGGAAATGGCAAAGAAGCACAACTGGAACCTGGTAGTAAGTTGAGTCAAAATGATCCCCCCAAAGGGAAAAACAACCAACAGGCAGCACCGGAGAGTAGCGAGGAGCTGGGGCAGACAGTGCCAGGGTCCGAAACCCAGGCAGGGAGTGAAGGAGGAGCTAAACCTGAACCTGAAAGTCAAGGCTCAGAAGGACCCAAGGCAAAGGAAAATGAGCTCTCCTAGGTCATTCTGCAGGAGGTGGTCTCAACTGTGGAATTGTGATAATGTATTTTGACTTTTGTGTGCTACTCAATGCTGATCTCACAACCCCCCTTGTCAGTTTTGTTAAAGCCCTTCCAGGCCTGTCTGTTGGTGTGTGCAGACCATGTACTGGTTCCTAGGGGAGGGCACCAGGAGGATGGATGGTGTTGGCCTCTGCTCCTCATTACTCTCTCTAGTTTCCTCTTGAGCACTGCCAACTGATGTGGAACTGAACAATATCTGAGTGGGAAATGAGCAGGACACTGAGGAAGGTGTGTTCTACAGCTCAGCTGTCCCTGCCGTTCCATTACACACAGAAGTGGCACTGTGGATTATGTGGGAATCGCTTTGGGATGCTTTTTTTGTTTATGTTTTTGGGTTTGTTTTGTTTTGTTTATGTTAAGAGCAAATCTGATGGCTCATTGCTCCAGGTTTTTTAGAGACGGTATGAGGTAGAACAGGACTGCTCTAGGTGTAGACCCATGGGTGCTTATGATAAGGTTAGGGATGAGGAATCACTGCTGGGTCACTTCCATATCCTAGTACAAAAACAGAAAAGAAAGCCACTGTACCAGGGTTTCTCTGGACTTGGACTTTCTCTGGATTGTCAGCTTGTGGTGCTTTCAAGTTCTCCTCACAGGCAGAGAGAGACTGGAAGGGTAGACGGGACCAGTGACTACTGTAAAACAAACTATCCAGGTGGGGCCTCTAACATTAGGCTGGGAAATAGGTTTGTGCTTGATTCTTAATACATGTTAGAAAATAGTATAAATGCTAAGTTGGTTAAGTAAAGAGCTAGTGACATGAGAGGATATATTTCCTGTCACAGCTAGAGGCTTGCTTGGTAAGACAGACCAAGAGGATATGGGAGAAGCAGGAGAATAGGCATTACCTTGCTAATATAGACGGGGCTAGACCATCCTTGGGTGTTTGACATGTTAACTCAGGTCTGAGATTGAAACCATCTTAAAAGGATACGCCTTAGTATCACTAGGGGGAACAGATCACGGTGCCTTCTTGTAGCTTGCTCTGAGACAGAGGGACTTTTCTTTTAATAGACTGTGACAAAGGGCCTGAGGATAAAGTACCGTTTGCTCAGACAGGAAGTTCTGGAACTTGGCAAGTCGCTGCACTTGAGAGTTTGATGTATACTTTGCTGTGATTGGCTTTTTATTTGTCTCCACTGAGTCCCAAGTGTGACTGACTATTTGCCAGTTGTACAGTGCTATGCTCTTAGGATCTAAGTTCCCAGCTACTTTTGCTCTGCTTTCAGATTGGCTGACTTTGTCGTCACTGACTTCTCAGTGTGCTATTTACAGGTGATCGCAGGGTAGGAGCTTACTGGTCAGTTTAAACCATAGCAATTAAGACAGAAATAAAGACGCAGAAACCAAATCCCTGTGCTGAGGGTCAGCATGCTGGTCCTGCTCTGCAGACAAAGGAGTTAAGCCTGGTCCTGTAGGACACATTTGTCCAAAGCTGAATACAGGTTTCAGATATTTCTACTGTATTTCGTTCTTGGTACAGCTGGACTTTCAGCTTTTCAAAGTTACTGATATTTTAAAAAATAAAAATGAATTTGTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014946:ENSRNOT00000020077:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.637
Domain overlap (PFAM):
C1:
PF0292612=THUMP=PU(69.7=97.6)
A:
NA
C2:
PF0292612=THUMP=PD(29.4=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGAATGTTACCTGTCTCA
R:
CCGTGAGTCCTTTGCACTCTT
Band lengths:
349-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]