Special

RnoINT0000714 @ rn6

Intron Retention

Gene
ENSRNOG00000061844 | AABR07005618.1
Description
NA
Coordinates
chr1:190368884-190369166:-
Coord C1 exon
chr1:190368992-190369166
Coord A exon
chr1:190368913-190368991
Coord C2 exon
chr1:190368884-190368912
Length
79 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TTTCAGCAGATGCTGGTCAGACA
3' ss Score
-5.73
Exon sequences
Seq C1 exon
TTTATAGACAAGGACCAGCAGCCCTCTGGAAGTGAGGGAGAAGATGATGATGCAGAGGCTGCCTTGAAAAAAGAAGTTGGTGACATTAAGGCTTCTACAGAGAAGAGGCTGAGAAGATTCCAGTCAGTGGAGAGCGGAGCAAATAATGTAGTTTTCATCAGGACACTTGGGATAG
Seq A exon
GTATGTCTGAGTAACAACAGCCCTAAGATCATCAGTCCCATTGTGTCTGGGCATTTCTGTTTCAGCAGATGCTGGTCAG
Seq C2 exon
ACAATGGTTTCGTGGGTATGGTTGTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061844:ENSRNOT00000084389:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.426 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF087955=DUF1796=FE(62.4=100)
A:
NA
C2:
PF087955=DUF1796=PD(7.5=70.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGAAGTGAGGGAGAAGA
R:
ACAACCATACCCACGAAACCA
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]