RnoINT0000814 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214668534-214668947:+
Coord C1 exon
chr1:214668534-214668650
Coord A exon
chr1:214668651-214668836
Coord C2 exon
chr1:214668837-214668947
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CACCGACCTTTCTCATACAGACC
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATGTGTAAAGACCTGCCTTGCCCTGAGACCTGTGCCCTGGAAGGTGGCTCCCACATCACCACCTTTGATGGGAAAAAGTTTACCTTTCATGGGGACTGCTACTATGTCCTGACCAAG
Seq A exon
GTAGGCCAGCCAGGATGGGGCTGGGGGCCCTCTGTCTTCTGAGGAGGGTGGAAGGACGGATTCTGGAGAAGGCTGTCCTTGGGGTGGTGGGTAATACTGCTCTTAGAAACAGGATGGGAAGTGGGGGATGTAGAGTGCAAGGAGGCTGTCAGATCCTCAGTAACTGCACCGACCTTTCTCATACAG
Seq C2 exon
ACCAAATACAATGACTCCTATGCCCTCCTGGGTGAGCTGGCCTCCTGTGGCTCTACAGACAAGCAGACCTGTCTGAAGACCGTAGTGCTGTTGACTGACAACAAGAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.1=71.8)
A:
NA
C2:
PF0009420=VWD=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTAAAGACCTGCCTTGCC
R:
TTGTCAGTCAACAGCACTACGG
Band lengths:
218-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]