RnoINT0000877 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214732529-214734642:+
Coord C1 exon
chr1:214732529-214732693
Coord A exon
chr1:214732694-214734547
Coord C2 exon
chr1:214734548-214734642
Length
1854 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
GGGTACCTTTCTATCCACAGAAA
3' ss Score
8.99
Exon sequences
Seq C1 exon
GGCTCTGTGGTAATTTCAACAGTATGCAGGCCGATGACTTCCAGACCATCAGTGGGGTTGTGGAGGGCACAGCAGCTGCTTTCTTCAACACCTTCAAGACTCAGGCGGCTTGTCCCAATGTTAAGAATATCTTTGAGGACCCCTGCTCGCTCAGCGTGGAGAATG
Seq A exon
GTGAATTTGTTTATTTAGCTGTTTGCCTATACTCTGCTGAATGCCGAGGGGTTTGTGTACTTGGTTTCATTTGTGATCTGGTTATTTCCCAAGAAACATTTTCTCAGCGAACTCTGACCGGGCTTGGTGTTCAGCAGTCTTAGTCAGGGTTTCTATCCCTGCACAAGACTCGTGACCAAGAAGCAAGTTGGGGAGGAAAGGGTGTATTCAGCTTACACTTTCCACATTGCTTCTCACCACCAAAGAAAGTCAGGACTGGAACTCAAGCAGGTCAGGAGGCAGGAGCTGATGCAGAGACCATGGAGGGATGTTAACTTACTGGCTTGCTTCCCCTGGCATGCTCAGCTTGCTTTCTTATAGAACCCAAGACCACCAGCCCAGCGATGGCACCACCCACAATGGCCTGCCTCCTTGATCACTAGTTGAGAAAATGCCTTACAGCTGGGTCTCATGGAGGCATTTCCTCAACTGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGCATACCAGCTGTCTACCCCGAAGTGATGAATAAGCAAACTAGTGTGTACTGTATTGTGTCAATCACACACTAAAGATACCCCACAGAGGGCACTAAAGTGTGTAGATGTCATATGGAGGAATGGGAAAAGGAAGCTTTCTCTTGGAATAGTTTGACTCAAAGTGAGCTCAAATTTGAATCCTCTATTTCTCTTCTGGTGTTTTCCAAATGTCTACATTTGTAGCGAGTGGCCTGTCTATTGTATTTGATCTGTCCTTGTTGCCTGTCTGTAACAAAATGTTTTGCCCCATATTTTATTGAGCAGCATGAAAAATATGGCCTGGGGAAGCAATGAGAAATTCTTTTTCATAGACATTTTAACAGTTTTACAAAAAAATTAATTTTCCTGACCTCAGTTGACCTGGAATATCACTCAAAACTACACACAGACTTTATCAACCTGTATCTGCTTGCTGCTTCCAACATTTATGGGGCATTTACTTTGTGTAATGCTGATTTCAGCCTGTTGGATGCTTTCGGCACATGATTATAATAATACACGTTCATTATTTTGGGTCAGGGCATGGAAAAGGACACAATTTAAGATTAAAACTATAAATTTGTCTTAGATTGTAAAAGCTAGTTATGGAAGAAGTCCAAGGCATAGCAAGGTCAGTTATATGGTTCTCTTAAAGGCAGGTTAACTTGAACAGGCTAAGCGTATGATAGGACAGCAGATTGGGTACACTGTCTTCAATGAGTCACAAGGCTTATTATTAACTTGACTCTAGCATCTGGAAAAAGTACATTCTTTTTGAAGACCACAGGTATTTTCAGAAAAAATTTATTGCTACAGTTTATACCATGTAGTATTACATGTGAAACAAATGTAATACTAGGGATACTCTAGGGAAGGGTGGTGACCAGCCTCCGTGTAGGCATCATATAGCAGGAAGATATGATGGATCTCCAGGACAGATTCAAAGATGGCAGGGACATCATCTTCTGTACACAGGGCATTGGACTTCAGGGACCCTGATTCAGGATAAAAGAAAGGAATAATGCTCTAATGTACTTGCGACATTGTCCAGCCCCATGACTAGGGTTGAAGAGGTGGGGTTCAGGATCAGCTGATCCTTCACCATTTTCCTCTGTATTTTTGTCCAGAAGTCTTGACTATTTGTCCATGGCAATGGCCATTCATATTCCTAGGAGGTGAGAGGTCTGGGGACATAGGAAAGAAGAGAAACAATGATTGTAACTTCTCTATGCCTCATGACCCCACGTGGGAGAAACCCAGGGACTTGGGTAAATAAGTAGCTGATGGGTACCTTTCTATCCACAG
Seq C2 exon
AAAAGTATGCGCAGCACTGGTGTTCTCAGCTGACTGATGCCAATGGCCCATTTTCCCAGTGCCATGCCACAGTGAACCCCAGCACCTTCTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.2=33.9),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(41.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGTGGTAATTTCAACAGT
R:
GAAGAAGGTGCTGGGGTTCAC
Band lengths:
257-2111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]