RnoINT0000879 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214735171-214735820:+
Coord C1 exon
chr1:214735171-214735297
Coord A exon
chr1:214735298-214735564
Coord C2 exon
chr1:214735565-214735820
Length
267 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTCTTTCTGTTCTCACACAGAAA
3' ss Score
9.34
Exon sequences
Seq C1 exon
AACTGCATGTTTGACACGTGCAACTGTGAGAAGAGTGAGGACTGCCTGTGTGCCGCCCTGTCCTCCTATGTGCGTGCCTGTGCTGCCAAAGGCGTGCTGCTCAGTGACTGGAGGGAGGGCATATGCG
Seq A exon
GTGAGTATGCTGTGGTAAACAACTCTCTTTCTGTACAGGCCAGGGCCCTATCCTTGGCCTAGTAGCTAATTGGATGCTCCAAGGGTCTTATTCCTACGTCAGTCTCTGAAACCAAGGGAGACCCAAGCCACTGTTACCAAGAGAACAAATTGGGAGACAGTGTCTGGAGAGCTGAAAAGGCTTTGAGCTGCTAGGTCCTCTTGTGGTGATTGCCAGGCTATGTGTCCACCAGTATTCTAAGTGTCCCTTCTTTCTGTTCTCACACAG
Seq C2 exon
AAAAACCTACAATTACCTGTCCCAAGTCGATGACCTATCAATACCATATCAGCACCTGCCAGCCCACCTGCCGGTCTCTGAGTGAGGAAGATGTCACCTGCCATGTCAACTTCATCCCTGTGGATGGCTGCACCTGCCCCAAAGGCACCTTCTTGGATGATTCGGGCAAATGTGTACAGGCCACTAGCTGTCCTTGCTATTACAAGGGATCCCCAGTTCCCAATGGCGAGTCTGTGCATGACAACGGGGCCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(56.0=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACGTGCAACTGTGAGAA
R:
ACAGCTAGTGGCCTGTACACA
Band lengths:
307-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]