RnoINT0000885 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214737205-214737549:+
Coord C1 exon
chr1:214737205-214737343
Coord A exon
chr1:214737344-214737435
Coord C2 exon
chr1:214737436-214737549
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATGGTCTTCTGCTGCTCTAGGAC
3' ss Score
8.68
Exon sequences
Seq C1 exon
CACCTGTGAGAACAGGATGTGGCAGTGCACAGACAAGCCTTGCCTGGCCACCTGTGCTGTGTACGGGGATGGGCACTATATCACTTTTGATGGGCAGCGCTACAGTTTCAGTGGGGACTGCGAGTACACACTGCTGCAG
Seq A exon
GTATGCTCGTCTGACAGCCTCACCCATGGCCACACACAGCCCTAGGAACTCACCATCCTTCCATGTCCTCTAATGGTCTTCTGCTGCTCTAG
Seq C2 exon
GACAACTGTGGTGGGAACGGCAGCTCCCAGGATGCCTTTCGTGTTGTCACTGAGAACATTCCCTGTGGTACTACAGGGACTACGTGCTCAAAGGGAATCAAGATCTTCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(65.6=85.1),PF053758=Pacifastin_I=PD(59.4=40.4),PF0009420=VWD=PU(18.5=59.6)
A:
NA
C2:
PF0009420=VWD=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGCAGTGCACAGACAA
R:
ACAACACGAAAGGCATCCTGG
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]