RnoINT0000887 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214737656-214739947:+
Coord C1 exon
chr1:214737656-214737835
Coord A exon
chr1:214737836-214739707
Coord C2 exon
chr1:214739708-214739947
Length
1872 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATCTCTGTGCTTCTCTACAGGGC
3' ss Score
11.43
Exon sequences
Seq C1 exon
AGCTATGAGCTGAAATTGAGTGACAGCAAGATGGAGGTGGTCCAGAAGGGTGTGGGGCAGGAGCCCCCCTACTTCGTCCATCAGATGGGCAACTACCTGGTGGTGGAAACCGACATTGGCCTGGTGCTTTTGTGGGACAAGAAGACCAGCATCTTTCTCAGACTCAGCCCTGAGTTCAAG
Seq A exon
GTGAGGCTGAGTGAGCCAAGGAGGCACCTTCTGTTATCCCTCTCAAGGGTTGGGGGGGGGGGATGAACAGAGAGAGACAGAAACACACAAAGACATAGAGAGAAAAGTAAGACAGAGAGACAGAAAGATTGAGTGAGAGATAGTCAGAGATAGACAGAGAGAGTGAGAGAGATCACAAGACACATGCAAAGAGACAGAGAAAGGCAAAGAGAGACAGAAAAAGAAGGGTGGTGGAGATGGCTCAGTAGGTAAAGGCACTTGCTGACAAGCTTTATGACCCCAGTCTAGAGGTTAATCTCCAAGACCCACATGGCAGAAGGAAGTGACCTCTGAAAGAGCCCTGTGTAACATGCATCACACCACAGACACACACACACACGAGACACACCACACAACCACACGACACACACACACCATGCACACTACAATAATGTAATACACCACTGACTGCACCCTCTGAAAGAAACTCGTGTAACATGCCATCACACACACAACGAACACACACACACCACGAGACCACACACACACACACACAACACATGCACACTACAATTAATGTAATACACACTGACTGACCTCTGAAAGAATACTGTGTAACATGCATCACACACACAGACACACACACACAGACACACACCACACACACACACACCACCACACACACACTACAAAATTAATGTAATACACACTGACTGACCTCTGAAAGAATACTGTGGAACATGCGTCACACCACACACAGACACACACACGCACACACAGACACACACAGCACACACACACACACACCACACACACCACACACTACAATTAATGTAATAAACACACTGACTGACCCCTGAAAGAGCCCTGTGGAACATGCATCACATACACACATATACAGAGAAGCGACACACGCACACGAACAACACACAATAGACAGACAGACACACACAGACACACCACCAGCAGATACACACACACACCACACCTACTAATTAGTGTAATACATTTTTGAGAGATAGAGGGAGGGGATGGGGGATGGATGGGAAGAAGCCTTAGGATAACAATAAGGAGACCTCCTGCTGTGCATATCTTGCGTGGGTGGGTGGGGGTGTAACAAATGACCATAAACTGGGTGGCCAGTTCTCTTTTGTACCTGGACACTGGAAGCCCAAGTGATGTATCAGTAGGGCTCTGACCCCTCTGGAGGCTCGGGAGGATCTTTCTTGCCTCTTTAGCCTTTGGAGCTCCAGGTGGCCTTGGATTATAGCTTCATTATCCTAGTCTCTATCTCTGTTGCCACATAGTTTTTCCATAAGTGGTTGTGTCTATACTTTTTTCTCTTTAATAAGGACACTAGACAGGGGACCCAGAACCCACCCTGCCTTAGTGGAGCCTTACATCATTTGACCACATCTTCAAAGATTCTGTTTCTAGGAAGGCACCATTCACAGGCACCAGAGTTAGAACAAATATGGGCCCACTGTTCAGGTCACAGTAGTTTTTATTTTTTTGGACTGCTATCCAAGACAGGCTCTAAGCTGACTGTGATGGCCCCATGCTCACCCGACAAAGTGACTGTGAACTGGTTCTAAAGTCAATGTAGAGAGAAGAAGGATAAAGCGGCCTCATGGAAAAAATGAGATTCCAAGCTGGGGGACTCCTAGCCCTCTTAGGAGGTCATGGGCAGGGGTCATGGCATAGGGCAGACACGAATGGGCACAAGTATCATGCACTACTACTGGACACCAGAGGGGTTGCCTTCCAAACTCACATTCACTATGTTTCCTGGACTCATCCTTCAGGAAGCTGGGTGGCAGTAGGGTAGATCAGATATCAGGGTAAAGGAAGGGGGCTCTGTCCCACACCTCTAATCTCTGTGCTTCTCTACAG
Seq C2 exon
GGCAAGGTCTGTGGCCTGTGTGGGAACTTTGATGACAATGCCATCAATGACTTCACCACACGCAGCCAGTCTGTGGTTAGTGACATGCTGGAGTTTGGAAATAGCTGGAAGTTGTCTCCGTCCTGCCCGGATGCCTCAGTGTCCAAGGATCCCTGCACTGCCAACCCTTACCGCAAGTCCTGGGCCCAAAAGCAATGCAGCATCATCAACAGCGCAACCTTCTCTGCCTGCCATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.1=100)
A:
NA
C2:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGCAAGATGGAGGTGG
R:
CAGGACTTGCGGTAAGGGTTG
Band lengths:
343-2215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]