RnoINT0000888 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214739708-214740435:+
Coord C1 exon
chr1:214739708-214739947
Coord A exon
chr1:214739948-214740278
Coord C2 exon
chr1:214740279-214740435
Length
331 bp
Sequences
Splice sites
5' ss Seq
CATGTACGG
5' ss Score
4.57
3' ss Seq
GATGCTTTTGTCTTCTTCAGGTG
3' ss Score
12.09
Exon sequences
Seq C1 exon
GGCAAGGTCTGTGGCCTGTGTGGGAACTTTGATGACAATGCCATCAATGACTTCACCACACGCAGCCAGTCTGTGGTTAGTGACATGCTGGAGTTTGGAAATAGCTGGAAGTTGTCTCCGTCCTGCCCGGATGCCTCAGTGTCCAAGGATCCCTGCACTGCCAACCCTTACCGCAAGTCCTGGGCCCAAAAGCAATGCAGCATCATCAACAGCGCAACCTTCTCTGCCTGCCATGCTCAT
Seq A exon
GTACGGCCATGGGGCGGGATGGGCTCTGGACCTTAGGATGGAGAAGCCATCAGCCAAGGGCATGGATGTCTGGGGCTCAGGGACCCACATGCATACATCAGAATGGACTATTGTTTGGGGATTGTTGACTCTGAACATGGACTGAGGAAGCTTCAGGCAGCTCTACGATCAGGGCCAGCCTATGGATGCTATGATGGTCTGGCAGGATATTCATGATCATACATTTGTCACCATGGACTAGTAGAAACTAGTCCAAATGATTAGGCTACTGTGTGCACTAAGAGATGGGGGAGGAGGAGTCCCCGGAGCCTGATGCTTTTGTCTTCTTCAG
Seq C2 exon
GTGGAACCGGCCAAGTACTATGAAGCCTGTGTGAATGACGCCTGTGCCTGTGACTCAGGGGGTGACTGCGAGTGCTTCTGCACTGCTGTGGCTGCCTATGCCCAGGCCTGCCACGAAGTGGGAGTGTGTGTGTCCTGGAGGACTCCAGACATCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCAATGACTTCACCACA
R:
TCCTCCAGGACACACACACTC
Band lengths:
344-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]