RnoINT0000889 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214740279-214741252:+
Coord C1 exon
chr1:214740279-214740435
Coord A exon
chr1:214740436-214741184
Coord C2 exon
chr1:214741185-214741252
Length
749 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TAAATCTTTCCATTTTCCAGCAC
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTGGAACCGGCCAAGTACTATGAAGCCTGTGTGAATGACGCCTGTGCCTGTGACTCAGGGGGTGACTGCGAGTGCTTCTGCACTGCTGTGGCTGCCTATGCCCAGGCCTGCCACGAAGTGGGAGTGTGTGTGTCCTGGAGGACTCCAGACATCTGTC
Seq A exon
GTGAGTGGTGCTTTGTCTGGGTTGCTGAACGTTGGGGCTGGGGATGAGGTGGGGGATAGCCTTCTGTGCTCCTCCTGATTTGGTTCTGGCCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTCCCTCCCACCACATGCACACCTGCCAGAACCCCAGTGGCCTGAGCTTCAGCTAGAAGAGAGATCACTGTTGCCTTGGGAGGAAAGGCGCTCTTGACTTGAGGCTGAGCTAGGAGGGAGGGTACCACTCTGTGTGCATGCACACACGCATGCACATGTTGTGCACACTCTGACCACTCAACAGGTATCTCTAATATGAGCAGCTCCAAGGGCTAGGAACTGCCAGGGATGGGGTATGATATCTGCTGTAGACTAGGGTTCCAGGCAAGCGAGGCCAGATGGTATTTTCCTCAAGATGCATTAAAGGGCCAATAGTTTCCTGAGGCAGGTGAAACAGAAATGAGGGTGAGCAGCTGGAGGAGGAGGCCTGGCCTCAGAAAACCTTCTGCAGTGGAGGCATCAATACCCTTTCTTAAGAACAGTCTATGTGGAGCCCTGAGGGAGTGGTGTGGCTGAGGGTGGCTGCTGTACCTGGAGAGTGCCATTTGGTGGTTGCTGCTCCTGGCACTCCCATTAGCCAGAGACCTTTATCTGAGTTACCCTTTCTCAGGTGGGGTGGGAAGTGGCTTATCCCAGTAAATCTTTCCATTTTCCAG
Seq C2 exon
CACTGTTCTGTGACTACTACAACCCAGAGGGTCAGTGTGAGTGGCACTACCAGCCGTGTGGGGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCAAGTACTATGAAGCC
R:
CCCCACACGGCTGGTAGT
Band lengths:
214-963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]