RnoINT0001434 @ rn6
Intron Retention
Gene
ENSRNOG00000000889 | AABR07011057.1
Description
NA
Coordinates
chr2:157031018-157035483:-
Coord C1 exon
chr2:157035344-157035483
Coord A exon
chr2:157033196-157035343
Coord C2 exon
chr2:157031018-157033195
Length
2148 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
CCACTTCTCTTCCTCCTCAGGGC
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATTCACAAAAACACGAAGGCATTGTATATACTAACCCAACTGTAACATCTATTAATCCACCACAAGCAAAACAGAAATGTTTGTTTGGCAAATCTCTTTCGGGTCTTTTAGAAGACAAAACGTTGCCTACTCCAAAACTT
Seq A exon
GTGAGTATCAGTTTGGGTTTCTACAGCACCTTCATTCTAAGGAATTATTTAATCAAACAAATTAATGTTTAGATGACCTATACATGAAGATAAGATCATTTTAAAATAGAAATAATTTGCACTGAAGTTTGAGTCATGTAATTGAAAGAAATCAAAAATACAGAATAAAAAGAAATAATATTCCCATGTTTTACCCTGATTGCATCAAAGATCCTAACCCACCAGCTTCTTGGAGGAAATGGGTCTAGGGAAGTACACCGCTGATAACCCTACTATAAAGTCTTCCAGCTTCTTTATGACTCCATATTATTCTGGAGTCAATCCCTTAATATCATTGCCTCTGAGATTACTCAATCTTTTATAATTAATGATATCTATAGACTTTTACTGTGCATTATCAATGAATTAGATATATACATTATTTTTTTGCTATATAGTAACATCTTTTATCATAGTGGACTAGATTTAAATGCTGCCTAATATGGCTTAATCTATTTTAAACTAGTTACTAAACTTCTTTGGAAATATATATTTACTGTCCACATCTATTTTAGCACTATAGCTGAGCTAGGAATTTATGCTATGTGTGATCAAATTTATCTTGTCAGACACATGAGCATTACTACACATTTCTTAGGTATTTTAGAGCAGAGTTTTCTGGTAACCATGTTTTTGATCATGTAATCAATTGAAAATAGAGAAAATATGGAATAAATCGGTGTATGGTAGTCATTTTTAGAGAATAAAATTATGGAGGAATAATTGACAAATACTTGGGTTCTTAAATGTGACAGTATCTTTAGACATAGTTAAAAATAAGAAGTCACAGAAAGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAAAAGAGATTAGCAGTCCATGACAGACAGGAAGTAAAATACTGATTTGATCTCTAGAAGGGAAATATCCCAATATTTACTTAGAATGCCATGCTTGAGAAAGATATTCATAGAAGGAAACAGAAAGTAATAAAGGACCATTCACCAAAATGCTTTGGGGAACAGAAGTCCAAACAAAACCATGATGTTACAAATGGGGGGAAAATGGATTAGGGAAGAAAATGTATTTGGAAGCTAAAACAGAAAAAAGTTCAATGACTACTTTATTCCTCTCAGTTATAGCTGTGCAGCCAAAACTGTTCTTGCTCAGGTTCACAATAAAAGACATATTTGTGCTTCAGGTGTGTATTTCTAATACTACAAGCTTATCCTTATCCCACACAGGATATGTTATCCATAATTGCAGAGAAAGGACAAGAATCAGATCACATATTCAAAATTCTACCTAAAGAATCACACTGGTCCCTGAGGTGTAGGGTTGACAGTGACAACACATTGACTGGAACGAAGAATACGTGCTTATAACAGCATCGTTCTTAAAGATAAGGAAGGGTTTTACATCATCAACATTAACATCCCTCTAGAGATGCGTATGTCCTTTCTGTCCTTTTTTTTTTTTTTTTGATTCTTTTTCTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCCTTTCTGTCCTTGAGATTACATGAGGATGTCTGTTTCCTGGAGCTATGGACACATGGCGTCTTGATAAGAGGCATAGCATTTAAAAGTCTGACAACCTCAAAGATCCATCACAGAGACACTGGTGAACAACCTCTGTTGGAAGTTAACATCCTCATATATCAGATGGGCTTTAGTTTGGCATTACAAAAGTTTTCCTGATTTCACCTCTGACCATACCATGTGAAGTAATAGTGGAACAAGTTATAATAGTGGTAAAAGTGTGTTTCACAAAACACGTTTCAATAACACTTACCAAAAAATGTCCTTCAGAAATAACAGCTCAAAATGGCTAGTCCACCACTGATCAAGAATTGGTGTAAACAGGCGAAGGCTGGGCGGGGTGGGAATGGGGTTCCTGCGGTCAGCCAGGGGGACAGCACAGGAGGCAGCGGCTTCAGCAGAGCAGATTGTCGCTCGGCTGCAGGCACTGATGGAATGGATAGGTAACAGAAGACCACTTCTCTTCCTCCTCAG
Seq C2 exon
GGCTTCAGCATGACCGAGTCCTTCCTGCACCCCACCAGCAGCCCTAGTGAACACCGCCGGGCCGAGCATGGCAGCGGGCTGACCCGGACTCCCAGCTCCGAGGAGATCAGCCCTACAAAATTTCCTGGATTGTACCGGACGGGTGAGCCTTTGCCTCCCCATGACATCCTCCACGAGCCTCCTGATATCGTGTCAGATGATGAGAAAGACCATGGAAAGAAAAAAGGAAAATTTAAGAAAAAGGAGAAAAGGACTGAAGGGTACGCTGCCTTCCAGGAAGACAGCTCTGGAGATGAAGCTGAAAATCCTTCCAAGATGAAGAGGTCCAAGGGAATCCATGTGTTCAAAAAGCCCAGCTTCTCTAAAAAGAAGGAAAAGGATTTTAAAATCAAAGAAAAGCCCAAAGAAGAAAAGCATAAAGAGGAAAAGCATAAAGAAAAGAAATGTAAAGTCTTGATGGCAGCCGATGTTGTTAAAGAGTGGAAGGAGAAGAAGAAAAAGAAAAAGCCAACTCAGGAGTCAGAGGTGCCTCAGACGGACGCCCCAAGTCTCAGACCCATTTTCGGCGTTCCCTTGGCTGACGCAGTAGAGAGGACCATGATGTATGACGGCATCCGGCTGCCAGCTGTCTTCCGAGAGTGCGTGGACTACATGGAGCAGCACGGCATGAAGTGTGAAGGCATCTACCGAGGGTCAGGAGTCAAATCAAAGGTAGATGAGCTGAAAGCAGCCTATGACCGAGAGGAGTCTCCAAACTTGGAAGAATATGAACCTAACACTGTAGCCAGCTTGCTGAAGCAGTATTTGAGAGACCTTCCCGAGAATTTGCTTACCAGAGAGCTTATGCCCCGATTTGAAGAGGCTTGTGGGAGGACCACAGAGACGGAGAAAGTGCAAGAGTTCCAGCGCTTGCTCAGGGAACTGCCCGAGTATAACCACCTTCTGCTTTCCTGGCTCATTGTGCACATGGACCACATCATTGCGAAGGAGATAGAAACCAAGATGAACATCCAGAACATCTCTCTAGTGCTGAGCCCAACTGTCCAGATCAGCAATCGGGTCCTGTATGTGCTTTTCACACATGTGCAAGAGCTCTTTGGCACCGTGGTCCTGAAGCAAGTAACAAGACCTCTGCGTTGGTCCAACACGGCCACAATGCCTACACTGCCAGAGACCCAAACAGGCATCAAGGAAGAGATCAGGAGACATGAGTTCCTTTTGAACTGTTTACATCGAGATCTGCAGCGCGGGATAAAGGACTTATCTAAAGAAGAAAGATTATGGGAAGTACAGAGGATTCTGACTGCCCTCAAGAGAAAGCTGAGGGAAGCTAAAAGACAAGAGTGTGAGACCAAGATTTCCCAGGACATAGCCAGCCTTTTGAAAGAGGATGTTTCCGAAGAAGAAACGAGCGAAAATGAGGAGGACATAAATATCCTCCTTGCCCAGGAGAATGAGATCCTGACTGAGCAGGAGGAGCTCCTGGCCATGGGGCAGTTTCTGCGTAGTCAGATCGCCTCGGAGAAAGAAAAGGTCCACTGCCTCCGAGCTGAGATTGCGGAGATCCAGAGTCACCAGCATGGCCGCAGCGAGACAGAGGAGCACTCTTCTGACAGCGAGTACGACAGCAAGGATGAGGAGGAGCTGCAGATCATTCTGGAAGACTTACAGAGGCAGAATGAAGAGTTAGAAATAAACAACAATCACTTGAACCAAGCAGTCAGTGAAGAGCGGGAGGCCATCGTTGAGCTCCGAGTGCAGCTCCGGTTGCTCCAGATGCAGGGAGCCAAGTCTGAGCAACAGCTCCAGGAGGAGGAGCCCGAGAGGCAAGGGGACACAGGCCCACTGCCCTGTGAGGGTGTCCCTGAGGTGATAGCAGCCAAGGAGCAGGTGAAGCCCTCGCCCAGCAAAGACCCGAAGGAGACGGATCTGAACTGCCCCGGCCCTGTGCATCATACTGTAAGCCAGAGTCCACTGCCTGTCCTGCCCGGCAGCGTTCTGTAAAGGCTCTCAGAGACGCTCACTCTTGCACACGTCTGACTCCGTGTCAGGCTCAGGTCCTGGGAGGGTGAAGTGGTGGACACTCGGTGGTGGGGGGCTTGCAGGGAACACAGGCATTTCCAGATAGTGTCAGTTTATTTGAAAATTAATTTTCTTTGATAAAAATAACTATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000889:ENSRNOT00000076491:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062022=RhoGAP=WD(100=21.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]