RnoINT0002595 @ rn6
Intron Retention
Gene
ENSRNOG00000054809 | AABR07026032.1
Description
NA
Coordinates
chr16:60017358-60018283:-
Coord C1 exon
chr16:60018078-60018283
Coord A exon
chr16:60017574-60018077
Coord C2 exon
chr16:60017358-60017573
Length
504 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTGGACCTTCTCCACTTTAGGCG
3' ss Score
7.49
Exon sequences
Seq C1 exon
TGAAGTGATATTGTTTGCTCTAGATCCTGGGCATAAGGAACCAGTGCCCACTGCCCCTTCCCTTCCTCCTGTTCTCTGTGCCCGGTCCTCTGTCCCCTGCCAGGATGGGAAGGGATGCATTCCCAGGGAGTCCCTCTGCAATGGTGAGGATGACTGTCAGGATGGCTCAGATGAAAAAAACTGTTTTCGGGTCTGCCATCAACCAG
Seq A exon
GTTGGTAATCCTGACGGCGGGCCTTTTGCTAGGGTAATCTTAAGGTCGATGACAGGAATTCCCAGAGCATGTTTATAAATCTGACCTCCCAACTTCCTCTGGGCAAGTTTGCATGTCATTATCTGTTGGAATGTGGACTCCCTAAGGACACAATCACACTTCATCCATTTGTCTGTGTTTGTTGCCTGTTTGCATCCTTAAATTTGCTAACTGTTTCAATATTTGCCTTCTTATAGGCTGGTCCACAGAGCGACCTAAATGGCCCACTGTAAGAGTTGGTAATCATTTAGCAAGCTGTCAAAGCAATGATTTAAATGGCTTGGTTCAGGTTAATAATGTAATTGACCTGAGCATGTTATTAAGCTGCCTTGTATGTTCTAGACATTAGAACTCAGATATGTGGGATGCACTCTCTTTAGCCCTCAGACTCTGGAACGCAGAAAGTTCATCTCATTTAAAATCTTCCTCCTGACCAATTTCAGTCTTGGACCTTCTCCACTTTAG
Seq C2 exon
GCGTCTTCCAGTGTCTGGATGGAAGCGGGTGCATAGAGGAGCGATATCACTGTGATGGGGCTGAGCATTGCTCCGATGGGTCTGATGAGTTGGGCTGCTGGAGGCCTGCTGATGACTGCTCACTGCGCTGTGACAACAAGACCCGCTGTATCCCTAAGAGTTGGAGATGTGATGGGAAGCCAGACTGTTTGGACAGAAGAGATGAACAAGGATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054809:ENSRNOT00000079224:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCCTTCCTCCTGTTCT
R:
GTCCAAACAGTCTGGCTTCCC
Band lengths:
346-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]