RnoINT0002604 @ rn6
Intron Retention
Gene
ENSRNOG00000059081 | AABR07026032.3
Description
NA
Coordinates
chr16:59999015-60000092:-
Coord C1 exon
chr16:59999839-60000092
Coord A exon
chr16:59999493-59999838
Coord C2 exon
chr16:59999015-59999492
Length
346 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
ATCTGTCTTGGCCTTTGTAGGTT
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATGGGGGTGATGTGCAGGTAACAACAGCTGTTCAAAAGACAATGGAGGATGCAGTCATATCTGTTTACCAAATCCCGAGGGCAGGACTTGCCGGTGTCCCCGTGGGTACTGCTTGGTTGAGGGCCACACCTGTGTGGAAGCTGTCCAGTGCCCTCCGACGTTGCAATGCTGTAAGGATGGTCAAAGGTGCATTTCCAAGGAGCAAATTTGCAATGGTCATGTTGACTGTCTGGATGGCTCTGATGAAGTGGACT
Seq A exon
GTGAGTACCTCCTACCCAGCACCCATTGTGCCTCAGTGTGCATGACTTTTGGAAGTACCCAATTCAATACTGCTCCTTAAGTATTTATCCTATATGTCACTGCCATGTTAGCACTGGTTTTTGTTACTGGACAATGTAAAATCCCTATTTTTTGAGCATATAAATTGTTATGTGTCCCTCTGGAAATGCCTTTGGTTTTAGGACAGAGAGCATGAGAGTGAATTGTAAGAAGCTGGACAGTTGTTTGAACAGGTCTTGATATCATTAGCTTAAATAGAATGACTAGTAACCACAGCACAGCAGAAGGAGGTTGGGCAAATGATTCCATCTGTCTTGGCCTTTGTAG
Seq C2 exon
GTTTAAATCCAGGTGAACTCCATTCCACATCAATACTTAAGAAGCCAGAAGCTTGGAAAAGGTTGATACCAGAAGCTTTCGAACTTTCCCAGGCTACTGAGTCTACCACGGATGTATATCTGGGACGAGAAGAAATGAGACATCCTGTCAAGACAACACTAACCACTCAAATGCCTGCATCAGAGAGCAAGGTTCCAGAAACCAAGGGAAGAGCGGAAACTGTTCAATCCAAGGACTTACGGACAGCGACACACAGGCCCTGTAGCCAGGACTTTTGCAACGGGAATGGGATCTGCATAATGGAAGGAAAGTTGAGAAAATGCCGCTGCCTGGTCGAGTATGGTGGAGAGTTCTGCCAAGAAGCAGCCCGTGGCCCTGCCACTGGCTACATAGCCCTGGGCGGAGTCATTGCTGTTTCAGCTACCCTGGCAGTTTTGGGGCTGTTCCTACATTCCAGAAGAGAACGTAAATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059081:ENSRNOT00000088948:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACGTTGCAATGCTGTAA
R:
GTCGCTGTCCGTAAGTCCTTG
Band lengths:
351-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]