RnoINT0003548 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3812009-3812624:+
Coord C1 exon
chr18:3812009-3812141
Coord A exon
chr18:3812142-3812481
Coord C2 exon
chr18:3812482-3812624
Length
340 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GTTACTTATATTTCTGATAGATG
3' ss Score
5.95
Exon sequences
Seq C1 exon
AATGAAGTAAAGGTAAGACTGACCGTGAGGAAGTCAAGCCTCTCCTTATTCCGGATTATTCTGAGGTACATCAATCCTGGAATGGAAGAAGTATCCGGCCGTATCACTGTTTACTCATCCAGGGGGAAGTCAG
Seq A exon
GTAGGCAGCCTCAAGCCTCTTTTCTTACCTGTGTTGTGGTTTTGCTTTTTAGAGACAGCGTCTCAGGACATAACCCCAGAGTAGCATGAGCCTCTAAACTTGGCTTTGCCTCCTTGCAATTGAGAAAGGATGAATAGAATATTCCTTTGGTTTTTTGCCAAGTCTGTCATCCTTAGAAAACATGAAGCCCATGAGAAGATCTGATTGGACAGGTCCCTTGCATGCTTTTGCTACCTTAAGTTTCTCCAGCTATACACTGAATACTGAAAGCTAAATTATGTAAAGTGTTAGTACTGCCTTCTAGAAAGATGTCTTAAAGAGTTACTTATATTTCTGATAG
Seq C2 exon
ATGCCTCTCAAAGCAAAGAGATCACCTTTCCCCCGAGTAAAGAGCCAGCCTTCGTCACGGTCCCGGGAAATGGCTTTGCAGATCCATTCTCCATCACACCAGGAACATGGATTGCTTGTATCCAGGTGGAAGGAGTCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTAAAGGTAAGACTGACCGTG
R:
GGACTCCTTCCACCTGGATACA
Band lengths:
270-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]