RnoINT0003552 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3820849-3823593:+
Coord C1 exon
chr18:3820849-3821009
Coord A exon
chr18:3821010-3823484
Coord C2 exon
chr18:3823485-3823593
Length
2475 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
AAACTCTGTTCTGTTTGCAGCAT
3' ss Score
8.69
Exon sequences
Seq C1 exon
GTGGAATTGCACCTACGTCTGCGGGTCCCACAGATTGGCCACTATGTGGTCATGTTGGAGTATGCCACGGAGGTGGACCAGCTTTTTGTGGTGGACGTGAATCTGAAGAGCCCAGAGTCTGCCTTGGCAGGCCAGGTGAACATATACAGCTGCAAGTACAG
Seq A exon
GTAATCAGCCCATAGTCCCCAAATTCCTCCACCAGGGAAGTCTGCCTGGGACTTGAGTGATTAGTGCACTGGACTTCTGAGGCAGCCTTTGAAAACCAACAGGCAACTTGTTATAAGGTCTAACATTATACCCAACCTGGTATTGGGAGCCTTTCTGTGGGCATCATTGTGAAATTGTATAATGGGTCACCTCTCCCAGCACGGCCACCTTCAGAATCCAGCGAATTAGTGGTTGGTGATTGCTGTGTGCAAAAGCAATGGTGGAGACTCTAGATTTACCCTAATAAAACTTTTGCCCAAGAGTGCTAATTGGCAAGGGCTTACTGGAAACGGTTTTCTTTGCATCATATTTCAAGAGCATTCTTTAATTAAAGAGTCAGCACAAAGGATATTTGCAGACGAGACTAAATATAAAATTAATGACACCTGGAGCTGTAGTCCCTTGATACAGAAAGCAGAAAGCTCCAGTAAACACACCATTTTGCTGGTTTTTTAATGTTGCTTTGTGTCAAACACAAGATAATGCAAAGAAGCTGACCATCTCCCTGGATATGAAATGAAAAAACTGTATGTGAAGAGTCGATTTTAGCAGTGAAACACGGGCGCTTTTGTGAGCCTTAACCAATGCCTGCTGAGTTAGTTATGCTCCTAACAATCCCAAAAAGCCATCGCTGAGGACTTTGTTTCTGGAACAAAGATCACAGGAAAGGAGTCATATTTGGATTTGTGTGTGGCATTGAGGATCAAACCTAGTGCCATGTGCATGCTGAGCAAGCCCTGTCCCGCTAGGCCCGTATCCTCAGCTCTGTATATCATATATCAAGAGCATATATGCACTTACGGGCATACAGTGGTTCTAGGGTAGTTCCTCAGAACCGTTTGTCACCATCTGAAAACGCAAATTTCGCCTACAGTTGGTATCAGTATCACTGTAAAGTGTACCCCCCAATGGGTAGGCCCTCGTGTGCTGGAGTCCTGGGTGTGTCAGCCACAGGCTTCCTTCAACCCATATCCATCCTATCTCAGCTTCCAGCTCAAATTTTAGACCCCTTGTACCTTTCAGATGACAGTCTGAAAGATGTCACATGTCACAGTCTGAAAGACGTCAGGGTCACATGTGCCATCCAGCCTGGCACGGCAGAAGGATGACCAAACCAAAGAGAGAAAGGACCCTTGCAGGATGCCATGCAGGTTTTATGGTGAGCACTGAGGGACATTGCGCAATGTTCTAGTGCCGTTAGCACATGATAGCAAGTAAGCACGTTCAGCAAGCCCGTCATTAGAATTCTAGGATAGCATCGCATTAGACTACCACTACCACTACCACTTAGCCACTCCCAGGAAAGTCCCGTTGTACAGTTTTACTTGGCCAAGGTATTTCCTTTTTTTATGCTTCAGTCATCAACAGGGGTCAAGTGAAAGCGAACTGACTACAAGGGTGGGAATCGAAACTCCAGGAATTATTTCTCCCATAGAGGCCTAGTTTGAATGAAAGGCCTGCTCAGCACTGCGCTGTCTCCTGCTGAGGGTTCAACGACCCCCTGCGTGTCTCAAGTGATTTCTAACCACTTTTTTAGAAAGACAAGGTCTCAGCAAAAGAGTGACAGGAGCGCCACTTTTCAGAATATTGAGGTGATAAACCAACCCTTTTCTCTGTAGTGACATGATCCTTAATGGATAAATCAATGGCTATCTGTTTCTTAGAATTTTTAAAGGATGATGATAAAACTAAATGCAAGCAAATCCCAGGATGACGCTTGGGTCAGCCGGACTGCTTCAACTGCATCTCCGTGCCCAGTCAAGTCTCTGTATATGACCCGATCTGGGCCTGACTCTTTGCAGATTTAATCTCCTTTTAGTCATTACCCAAATACCCTTGACTAAATTATGTCATGTGTTCATTGTTACGTCATATCGTCTTCACCTGCTCCTGCTCCTTTTATATGTGTCCAGAGGAAATGGCCCTACGCATGCTTCCAAAAAAGCATGTTTAACCACCAGAGCCAGATTCTATGTTGCAAAACTGTGACGTTTTAAGAATGGTTTCGAATTTGTCTCTCACCTGATGGAGTGGAAGGTGGGGACCAGAGGTAGAAGTGGGAAGGGACTAAGGAAGAAACCAAACTCATACTCAGACTTGCAGAAAGTCTGGCTTGCCCGTTTGTTAGTAAAGCCAGCTGTGCCCACTGATGGGTGTGGGAAGGTTGTTGGTGGCAATTTGAATGACAAATGGTTCAACAAATAAATTCCGAGAGAGCGAGGCTCCACTCTAGCCACCTTCAAAAGATCACAGTGGTGAATGCCTTCCAAAATGAATTTGGGGGATCCTTCAAACCATAGTAGACTGCACCCCCTTGACCTCTCATGCAGGAAAACTGACTCTGGTTCGCCCACTTATCAAGAAGGAAAGCAGAACGGCGGCCAGTGGCAAGGAGATGCCGATGTCAGGCTAAGAAAACTCTGTTCTGTTTGCAG
Seq C2 exon
CATTCTGTGCAGGAGTGTGGTGATTGACAGCCTGAGTCGTACAGCTGTGTATGAGCTGTTGGCAGATGCAGACGTTCAGCTCAAGGTGCACGCGGCCCGTTTCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]