RnoINT0003553 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3823485-3825216:+
Coord C1 exon
chr18:3823485-3823593
Coord A exon
chr18:3823594-3825118
Coord C2 exon
chr18:3825119-3825216
Length
1525 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
TTTACTTATTTTCTTGACAGCAT
3' ss Score
8.02
Exon sequences
Seq C1 exon
CATTCTGTGCAGGAGTGTGGTGATTGACAGCCTGAGTCGTACAGCTGTGTATGAGCTGTTGGCAGATGCAGACGTTCAGCTCAAGGTGCACGCGGCCCGTTTCCTTCTG
Seq A exon
GTATGCCTTCACCCAGCCCACTGAACTTGCAAAGCCTTCTTCTGTAAATTCAACTTCTTATCCTGAGCCTTCTTCATGTCACCTCACAAAGTTCAGCCATCAAATACGAAGGCATCACACACACACACACACACACACACACACACACACACACACACACACACACAAAACAAAACAAAAAAAACAAAAAACAAACCCACTTTCTTTAACTTTCACTTATCACTATAGTAAATGAAGTACCTTTTATCATATTTTCTACTTTAGTTTTATTATGTCTGGGCACAGAAATGACACTATTTTTCACTTAATTTCTGTCCGTTTTACCATCCTATATGGTTTCTTGGAATGCTTGGTCAGGTGTTTAAACTTTATAACTGGTTATGTAATAGTACCCTATGTTTCAGCATGGGTTTATTCAGCTCATTAGGTATATATCCTTAAGATTTAAATGCCAACTATGACAGATAAATGACATTCATGCCTACCCATGTGATGGCGGAGCTTGACTACTGAGCGCAGTGAGATCTGCCTAGGAAAGGACTGTGAAGATTTACGTAACTATCTCAGGGGACCGAAGATTACCTAAGTGTGACGCAGCCTCCCGTTACTGCTGGCAGTGAGCATGCATCAGACTCTGGGGAATGCCAGGGGGACTGTGCTTTAAATATTTGTGCCTAACCTAGCAGGAGTAAGTAAGTAAAAGCTTCACAATTTAAGGAGTAGTTTGAAATAAAACTTTAAAAAATGATTACTGTGATAGAATGGTTTTCCTTCACAAATCTAACCTCTTCACTTCTGGAAATTATGCTGGGATTCAGTTTAAGTGTGGGTTTGCCCTTTCAACAACAGCCCAAGGTCACTGAATGTCAGGCTGACTAGAATGGGGGCTCCATGGGGGTAGGACAGTGTCCATCTCTGCCCTAGAGATGCCTGGAGTCTCAGTGATGGTTCATACATTTTTGTTGTCGTTACTACTGAGCCACTAAGCTGATAACTTGACTCTGAATGCAGTAAGAGGCACTTTAATGGCTGAGCTTCTTAAGTGACCCCAAAACTAGCCGCAGGGACAAATCCTTCAGCGTTGGTGTGGGCCAAAGTCTGAGACATCTTTTACTAAGAAGGGTGCTTCTCCAGACAACGCCAGGTCTTTGAACTGCATGCTCCCTGGCTTCTCTGTTCCTCCTGAAGCATTTCAGATATCAACCTTGAACAACAGTGGCCCCAAGTCACAGAGAAAAGAAGGCACCAAAGCCCACTGAACAGATTTGATCTTGAACATTGCTCTGACTCTGCTCTGTATCTGTGAAAACATTTCAACCATGATGTAGTCAGTGACCCTGTGCAGTAAGAAAAGGGATTTGCTGCCTGTGGAGGTTTACATGCTTGCCATCCTGCAATTTCACTTCTTTAGCGTAATAGAAATTTTCTGGGTGAGTTCTTCACTTAGTAACTGCTTTTTAAGAGTGTGCAGGAGCCATTAGTTTTACCAGTCATGGTTGTGTGTTTTTACTTATTTTCTTGACAG
Seq C2 exon
CATCACATCTGCGTCATACCCGCTGAAGAATTCTCAACTGAATATTTGAGACCTCAAGTCCACTGCATTGCCAGCTATGGGCAGAGTGCCAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTGTGCAGGAGTGTGGT
R:
GCACTCTGCCCATAGCTGG
Band lengths:
198-1723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]