RnoINT0003952 @ rn6
Intron Retention
Gene
ENSRNOG00000001825 | AABR07034767.1
Description
NA
Coordinates
chr11:88927462-88928572:-
Coord C1 exon
chr11:88928408-88928572
Coord A exon
chr11:88927636-88928407
Coord C2 exon
chr11:88927462-88927635
Length
772 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAA
5' ss Score
5.96
3' ss Seq
TTTGCTCTGTGTGTACCTAGCAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
GCCACAGAGAACTGCGTATGCATTCTTCATAACCTCTCCTACCAGCTGGAGGCTGAGCTCCCAGAGAAATATTCCCAGAGTATCTACATGCAAAACCGGAATATCCAGACCAACAGTAACAAAAGCATCGGGTGTTTTGGCAGCCGGAGTAGAAAAGTAAAGGAG
Seq A exon
GTATAATGGGGGATCTTTGAGAGATGTGGGTTGGAGATGGGGACAAAGGGGGAGTGGGGTTGGAGGCTCTGATTCCTGCTCTCATGTCGGCTACTGTTTCAGATTATTTTGGTTCTCACATCAGCCCTCCCATGAGGCTTCAGGAAGGAAACAGGAACAGAGAAGCTCATTTAGTTTCCCTACATTGATGGAGTGTTTGGGTGACAAGGATAATGTTTAATCCCCACTCATCCGGCTCCCAGCTTGTGCTGTTAAACCATGCTGCCCTGTCCTTTGTGGGCCAGGTACAGCCATTGTTTGAGCATTACCTGAAATCTAAAAAACAAAACATGAGCACATTAAGAGTAAGTTTCCTAGAAAGATGCATATCTCTTTCAAAACTAACATAAATATGAAAAAAAATGGGAACTACCATGTTTTTAGTCTTGTGGTATTCTTAAATTTGGAAAATGGCTGGTAAATTGATACTATTCCAAACCACTCTATAAGCATCTGAGGAAACAGACTTGTTTTTCTTGTCTTCAAAGTGATGGTGACCATTTAGAATTTAGGTTAAATGTAAGGACCTGTATTTAATTCCCTTACTGTGATGTGTAAGGTGAAGAATGTGAACGTTTCTTAGAAAACAATAATTACTGTGAGCTAAAAGTTAAGTGATTGAATATACTGTTTTTGTGGTTTGTTAGTCTTTCCAGACAGTGTTTCTGATCTGTCAGTGTGGGTGCACAACTGTAGGCATCACTTGAAGTGCATTTGCTCTGTGTGTACCTAG
Seq C2 exon
CAATACCAAGACACGCCGATGCCAGAGGAAAGGAGCAGTCCCCGTGGCATTGAGTGGCTGTGGCATTCCATTGTGATAAGGATGTATTTGTCCTTAATTGCCAAGAGTTCCCGAAACTATACCCAAGAGGCATCATTGGGAGCTCTCCAGAACCTCACAGCAGGAAGCGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001825:ENSRNOT00000002498:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=WD(100=72.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGAGAACTGCGTATGC
R:
CGCTTCCTGCTGTGAGGTTC
Band lengths:
334-1106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]