RnoINT0004119 @ rn6
Intron Retention
Gene
ENSRNOG00000058398 | AABR07035780.3
Description
NA
Coordinates
chr12:22357698-22359729:+
Coord C1 exon
chr12:22357698-22357915
Coord A exon
chr12:22357916-22359546
Coord C2 exon
chr12:22359547-22359729
Length
1631 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TCTTTCTGTGCCTTCTGCAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
CTCTGCAGTGCCCCGCCCACAGCCTGTTCACTGACTGCCTTCCCTCCTGTCTGCCTTCCTGCTTGCACCCGGATGGCCTCTGTAAAGGAGTCAGTCCCACAGTCCCTTCCACTTGCAAGGAGGGCTGCGTCTGTCAATCTGGCTATGTGCTGAGTAATAACAAGTGTATACTCAGAAATCAGTGTGGCTGCAAAGACGCCCACGGCGTTCTCATCCCA
Seq A exon
GTGAGTGGGAGCAGATGGTAGGCTTGGTGGAGGCTGGGGAAATCCCTCCATTATGAAGTATTTGTCCTGCAAGTGTTTGGACCTAGGTTTGAATTCCCACAACCAACATTGTGTGTAAGACGCACAGAGCCTAGGTCTAAAATCCCACTGCTTCTACTGGGATATGGGAAAGGAAGACAGCAGAGTCCTCAGACACTTGAAAGCTAGTCTCATGTGTGCCGTGGTGACGATCAACAAAAAAGATAGAGAGATAGAAAGGAAAATTACCCTCTGACCTCCATGTCTGTGTGTGCACGCACACACACAGAGATACACACAGAGAAAGAGACACATACACACTAGACATAGACACACAGACACACACACTCACATAGATATAGACAGACATACACACACACATAGATACACACAGAGAGAGACAGACACACAGACACACACACATAGACAGACACATACACAGACATAGACACACAGACACACACACTCACATAGACATAGACACACAGACACACACACTCACATAGACATGGACACACAGACACACACACTCACATAGATATAGACAGACACACACATAGATACACACAGAGAGAGACAGACACACATAGACACACAAAAATACACACATAGACATAGACATAGACACACACACATAGACAGACACATACACAGACATAGACACACAGACAGACACACACTCTCACATAGACATAGACACACACACATAGACAGACACACACATAGTCTGTCTCTGTCTCTGCCTGTTTCTCTGTGTCTCTGTGTCTCTGTGTCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTAGGCTGACTTAAGTGCTCACAGAAGAGGACAGTCTTAGGTGTTGATCCTCAGTTTTTGCCATGTACAAAAAAAGAGTGTCCCACACAGACAGACAAAGACAGACACACACACACACACACAGGAGGGTGAGGGAAGGAGGGAGAGAGTAGCTGATGTCTTTAATCCCAGTACTTGGAAAGCAGAGTCAGGTGGATCCCTAAAGTTCGAGGCCAACTCTACATAGCAAGTACTAGACTCTCCAGGACTCCATACTGAGAACCTGTCTCAAATCAGACAAACCAACCAATAATATATGAGAACATGAAAAGGAACCCCGCACAGACTGGAACCCCACTGGCTCATTTCTTCTGCTTCTGTGCCCTGGGATTCTCCAGTCTCTCTGGCTGGAATGTGAAGGTTGTTCAGGTCCAGGCACAGGGGAGGCAAGTGCTTAACCACTGAACCACTGAGAGAAGGGCGCGGGGTGTTAGTCTATCGAGAGCCACACAACGTCTATTACTGAGGATTCTAGTCAGGTGCTCCACAGGCTGAGCTATGCCGCCTATAGGATTTGAGGCCACCATTCTACCACTGGCCCATCCCCCAGTGCCCTGTCCCAAGCCCCCACCTCCTCACTGGGAGATTCTAGACAGGTTCTATTCTGCTGAGTTATGCATATGAGCAACAGAAGGATTTGTTCTCAAATATTTTCTACCTGCCGAGATGAGGCTGTCTCTTAGCCAGCCTCTCCTCCCTCCACTTCCTGTCTCTTTCTGTGCCTTCTGCAG
Seq C2 exon
GAAGACAAGACCTTGATCTCCAGAGACTGTACCCAGAGCTGTGTCTGTACAGAAGGGAGCATCCAGTGCCTGGTTTTCCAGTGTCCCCCTGGGACTTACTGCAGGGACAGTGGTGATGGCAGCGGTACCTGTGTCAAAATCAGTAAGGGGGCCATGGGGGAAGATGGGGAAGCTGTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058398:ENSRNOT00000084705:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCACTGACTGCCTTCCC
R:
CCCATGGCCCCCTTACTGATT
Band lengths:
353-1984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]