RnoINT0004122 @ rn6
Intron Retention
Gene
ENSRNOG00000058675 | AABR07035780.5
Description
NA
Coordinates
chr12:22340574-22341501:+
Coord C1 exon
chr12:22340574-22340916
Coord A exon
chr12:22340917-22341283
Coord C2 exon
chr12:22341284-22341501
Length
367 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
CTTCTCCTTGAACCCCATAGTTC
3' ss Score
5.31
Exon sequences
Seq C1 exon
CTTCTGGTGTGTCTGAAGACAGCGACAGTGTGCTCACATACATAAATAAATCTTTTTTAAAAACAACAGATATTTTGTACTGGTACTTGGTTGGCTGAGTAGATATGGAACTCAAAGACAGGGAGCATACAGAAACCCTTGAGACATGAGGCTAGCCCGATTCTTGAGAGCATCCCCTCAGTGTACACCTCCTTTCTTATCCCCTGACTTCTGTAGGCAGGCAAGACTTGGATCTCCGAAGACTGTACGCAGAGCTGTACCTGCGTGAAAGGGACCTTGAGGTGCCGGGATTTTCACTGTCCCTCAGGGACTTACTGCAGGAACAGTACCTGTGTCAAAATCT
Seq A exon
GTAAGGGAGCTGTGGGCAGGGTGGGGAGGGTGTGCTCAAGGCAGGAAAAGTCAGAGGCAGGGCAAGAGGATCTGGGCCCTCTGGGCCTAAAGCTGAGGGCTAAGAGATACCCTAGTTAGGAAACCCTCTGGTGACTCATGTTTAGCTAAATCTGTTCCCAACGCTAGACTCTAAATGGTTACTCTCCCACATTCTTTCTCCTTTCTTCCCTATGTCTTGGCACAGAATCCACTGTCAGTAAGTGTTTGCTGAATGCACAGTGAAAGGGGAGAAGCCCCAAGATCTGTTATTCTACCCGGCTTGGTTTCTGTATTCTACAGGGCACCTCTACTCTCTCCACTAACCCCCTTCTCCTTGAACCCCATAG
Seq C2 exon
TTCTGCAGTGCCCGGCCCACAGCCAGTTCACAGACTGCCTTCCCCCCTGTCATCCTTCCTGCTCTGATCCCGAAGGCCACTGTGAGGGCATCAACACCAAAGGCCCCTCTCACTGCAAAGAGGGCTGCGTGTGTCAATCTGGCTATGTGCTACAAGACGACAAGTGTGTGCTCAAAATCGAGTGTGGCTGCCGAGACACGCAGGGTGGCTTCATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058675:ENSRNOT00000091067:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTAGCCCGATTCTTGA
R:
TAGCCAGATTGACACACGCAG
Band lengths:
342-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]