RnoINT0004126 @ rn6
Intron Retention
Gene
ENSRNOG00000058675 | AABR07035780.5
Description
NA
Coordinates
chr12:22344736-22345492:+
Coord C1 exon
chr12:22344736-22344877
Coord A exon
chr12:22344878-22345274
Coord C2 exon
chr12:22345275-22345492
Length
397 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
3' ss Seq
GCTCTCTCTTCCCCCCACAGCTC
3' ss Score
11.65
Exon sequences
Seq C1 exon
GCAGACAAGACATGGATCAACAAAGGCTGCACACAAATCTGTACCTGTGTGACAGGGACCATCCACTGCACGAATTTCCAGTGTCCCTTAGGGACCTACTGCAAGGACATTGAGGATGGCAACACTAACTGCACCAAAATCT
Seq A exon
GTAAGAGGACCACAGGAAAGGGGGAGGGTGCTGTTCATGACTGGGGAGACTGGGGGCACGGCAAGAAGGGACTTAGTCCCCTGGGCCTTAAAGGTTGGGGTAGGAGGTGACACAGTGAGGAGAGATTCTAGGGACCAGTTTTTGGGCTAAGTACTTTCCTAGTCTTGGTTTCCTCATGGTTACTACCCCATAATAACTTAGAAGGTCCATTCTTATTATTTTCTTTCCTAGGGGATTGGCATATAGCCTGTTCAATAAATGTTTTTGAGGGGAAAAAATAAAAAAAACTACCTTCAAGTTCTCGTGAACACTTTACCTTCTCCCGTTTCTACAGCATCTGCTTCCATAAGCCGCCTCTGGGCCTCTCCACTTACCCTGCTCTCTCTTCCCCCCACAG
Seq C2 exon
CTCTGCAGTGCCCCCCTCACAGCCTCTACACCCACTGCCTTCCCTCCTGCCTGCCTTCCTGCTCGGACCCAGAGGGCCTCTGTGGGGGCACCATCCAGAAAGTGGCCTCCACCTGCAGGGAGGGCTGTGTCTGTGAACCCGGCTATGTGCTGAGGAACGACAAGTGTGTGCTCAAAATTGAATGTGACTGCGAAGACGCCCACGGTGTCCTCATCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058675:ENSRNOT00000091067:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCAACAAAGGCTGCACA
R:
GGGATGAGGACACCGTGGG
Band lengths:
347-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]