RnoINT0004130 @ rn6
Intron Retention
Gene
ENSRNOG00000061778 | AABR07035780.6
Description
NA
Coordinates
chr12:22361578-22363364:+
Coord C1 exon
chr12:22361578-22362451
Coord A exon
chr12:22362452-22362853
Coord C2 exon
chr12:22362854-22363364
Length
402 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
3' ss Seq
CCACCCTCTCTACCCCACAGCTC
3' ss Score
9.63
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTTTTTACAAAGCTGGGGGCCAGGGAATGACTCCAAAAAGACACTTGCTCTCAAGCTTGAACACCCAAGTTTGATCACCAAGACTCACATGGTGGAAGGAAAGAACTGACTCACACAAGTTGTCTTCTGACCTCCTCCACATGTGTCCTTGTGTCTCTGGCTGGTTCTTGAGTCTGAAAGTTGGTTAGGGCCTGGCACTTGCTGGGCAAGAACTCTACCACTGAGCCACACCCCCAGCCCCTCACTGGGGGATTCTAAGCAGGGGCTCTACCACTGAGCCACACCCCCAGCCCCTCACTGGGGGATTCTAAGCAGGGGCTCTACCACTGAGCCACGCCTCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACGGAGCCACACCCCCAGCTGCTCAATGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACACCCCACCCCTCCCTGGGGGATTCTAGGTAGGTGCTCTACCACTGAGCTAACCCACTTGCCCTAGACATAATCTCTTTTTTTCACTATTTCCCATCTCTAATTATTTGATTCAATAGTTGTGAAACTTTTAGACAGAGGGCAAATGTAAATACTTCAGACAGGAGGTGTGTCTGTCTCCTAGGACAAGCTCCTCCACCCTCCCTTTCTCTTCCTGTGACTTCTGCAGGCAGGCGAGACCTGGATCTCCAAGGGTTGTACCCAAAGCTGTGCCTGTATGGGAGGGGCCGTTCAGTGCCAGAATTCCCAGTGTCCCCCAGGGACTTACTGCAAGGACAGTATCGATGGCAGCAGTAACTGCACCGAAATCA
Seq A exon
GTAAGGGATCCACAGGGAAGAAAGGAACGGTGCACTCATGACTGGAGGGATCAGAGATAGGGCATGAAGGAGCTTAGTCCTCTGGCCTTGGGGGTTGGGGATAGGAGGTCCCACAGTGGGGAGGGATTCTGGACACCCAGTGCTGGGCTGGGCTGGGCCATTCTCCGCTTTAAATCTCCCATGGTTAGTCGCATGCTAACTTGAGAGATGCATTGTTTTTTAGACTCCCCCATGTCCTTCTTCCCCAGGGCTTGGCAAAAAGCCCACGCTCAGTAGATGTTTTCTAAATGAGTGAAAAGACAGACAAGGCCCAAAGATCTGTTGTTCATCGTGCTGTGTTTGGTTTCTATAACCTGGGCTGCCTTGGGTCCCCTCATTTACTCCACCCTCTCTACCCCACAG
Seq C2 exon
CTCTGCAGTGCCCTGCTCACAGCTACTTCACCACCTGCCTTCCCTCCTGTCCCGCTTCCTGTTCCAATTTGGATGGCAGCTGTGTGGAGTCCAACTTCAAAGCCCCCTTTATCTGCAAGGAGGGCTGTATCTGTCAACCCGGCTACTTCTTAAATAATGACAAGTGTGTGCTCCGAATTCAGTGCGGCTGCAAAGACGCCCAGGGCGGCCTCATCCCCGTGAGTGGGCGTGGAAAGTGGGATTGGTGGGTGGCTGAGGAGATGGCTTACTGGGTAAAATGTTTGCCTTGCAAGTGTGAGCATCTGAGTTTGAACCTCAAACTCAGTAAGCTGGACATGGTAGCCTCGAGCTTCTACTTGGAGACAAGAGAATCCCTGGACTAGCTAGTTTTGTGATTAGACAGAGACAAAAACAGACACCCTCACAATATACGAGAGGGGTGAGGACCTACATTCTGGGTTATTTTCTGACCTTCACACACACATGTACAAACACTCCCACACATGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061778:ENSRNOT00000083323:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGGTGTGTCTGTCTCC
R:
ACAGATACAGCCCTCCTTGCA
Band lengths:
345-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]