RnoINT0004203 @ rn6
Intron Retention
Gene
ENSRNOG00000051442 | AABR07036019.1
Description
zinc finger protein 11 [Source:NCBI gene;Acc:100363065]
Coordinates
chr12:30655898-30662711:+
Coord C1 exon
chr12:30655898-30655925
Coord A exon
chr12:30655926-30662615
Coord C2 exon
chr12:30662616-30662711
Length
6690 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTCTGTTTGCAATAAACAGGTC
3' ss Score
7.19
Exon sequences
Seq C1 exon
AAACGATCCGTTCCGGAATCCGGACATG
Seq A exon
GTGAGTCGGGGCCCGGCCTCAGAGCCAGGAGGTTTTGCTGTAGCTGCAGCCGTGCAGGGTTGGAGGCGAGTCCCGGGTCGACTCCTTCTGGGGCGGCTCTTTCGGCTCGCGGCGAGGGCACAAGTCTGGCAGCCCGATGGCGGGATACTGGGGACACCCCGACTCCCCGTGTGCAAGTTCTGCCCGAGAAAAGCTTTGGGCTGGGGTCCGCGCCCCCTTCTCCTGAGCTTCCTACATCACTGGCAGCGTCCATTCAGGACAGTGACTTCCTAAGACTTTTCCATGCCAGTTTCCTGTCTTCACATTAAGCTGTCCCCGTGTAGATTTCAAACAGACTCTGTGCTTTTTATATTTCTCCCCCCGGTGCACACCAGGTGGCAATTTGAAAGAACTTGTTTTGTGTTCGTGGACTTTGCGCCGGTGCAGAAAGCACGGGACTCCTGGTAAAACTTTTCACGTCACACTTCTCCCTAGGCACAGACATTTTAGCACGAAATCTTTGGGTTGAGCTTTCCCCTGGCTGATTTCAGAGGTGATGGGTCTTTTATTATTATTTTTTTTTTTCGGTACCGGATTTCAGTACTTCGGATCTCAAGTGCAGATAATAAATGCTACCGGTGCCAGGTTTCAGGATAGGAGTTGTTAAGGTCCCTGGAATTCTGCCCTAGGGCGGATCTGTGAGCCCGCAGCTTTTAAGGCTGGATACCAAGTGGATAGGGGGAACGTTTGGTATATTTTATCTGAAGACATTGCGTTTGTTTACATATCTTGGCTACTATAATATTATAACTGTGTCCTTGTCCTGGTGTACTTACTCTGTACTATGACTTTTGGGTCATATAGTAAGTCAACTTTAACTTCTTTATGTAGAGCTTTCACATTATTTAAAAATTCATATAGTCAATTTGCCATCTTACCAATAGTTCCCAAGGGCTGCCCCTCCCCATGTTTATGTTCCCTAGAACCTCCCCGCCCCGCCCCCCTTTTCCTTCTAATGACGTCTCTCCAGGTAGCCCATGCTGGCCCGGAGGCTTTTTTTTTTTTCTGCCTGTCTGTCTGTCTGTCTGTCCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTCTTTTATGCTTCCTGAGAGCTGGTTTAACTTTTTGATAAGAGCTCCCAGTCTGGGGTTAAATTACTGTTGCAAAGAAATTAGAGCTCATGCTTTTTTGTAGCTCCTGGAAGTATATACCAGAAACACTTTCTGGGACTGTACAGGGACCTGTCACTTTTAGCTTTTCTACCTCAAACTACCCTGTGGATGTGCTTACACACGTATGTATAGCTACTCACTGCCTGAGGTCTAGGGAGACCTTCCCTCTCCTTCGTTCCCAAAAGCTTGGCAGTTCATATACAGCCCCTTTAATGAAAGAGGGTATATTTATGTCACTCAGTGCTCCCCACCCCACCCTACCCCCAGCCCTTGCACCGCCACCATGTCCGGATTCCGTGACTGAAACACTCAGGACCTGTGTAGTCAGTGTATCAATGTGGCTGAAACCCTCACATGCCTTCTATATTTTGGCCAGTTGGTGTTTTCTGTACCGGTCTCCATCTGATGCAGAGAGGATTTTCCTTGACGCTGGGCGAGAGCCACATTTATCTGTGAGTGTAAGGATGAGTGTTTCGCATGCGGTTAGAAGCCATGCTAGCCCAGGAAAGTGACAGTTGTAGGTTCCCCTCCTCAATCCATGGTCTCCCTGGCTCTGGGTAGTTGGTTAGGTTCCCGGTACCAGGCACGATTTCCCTCTTGGTTAGAAGGATCAAGTCCAGATGAGTTGCTAGGTAACTTCCAAGCTATTTTTGTGGCTTATTGTGTCATGATCCCATGGTGTCATGTATAGGCATCCTAGCTTATAGCACTATTGCCTGCCTCTCTCCTTTGGAAACTTGCATGGCACCATCTGGTCCCTTGAAAGCTAGTCCTCATGGAGGGGACTTTCAGATCACATCCTCTGGGTCCTGTATTTGAAGTACACAGTGTTCTGCAGAAGAGAACCGAAGGCAATGGCAGTAATTTATCATGTTTTGGAAGTCTCCAGTGTTCCCTGTAAATTCCCTTTAATATATATTTATTCTGTTGGTTCGATTTTTCTAGGGAATCCTAACGAATACAGTGTGTTAAGGTCATTTAAGCTGACAATTTGTGTTTCAAGTGTGCAGGGTGATTTTCCATAAACAAAGTCTCACAGCCATTTCAAAATCAGGGAAGCCACTAAACCAGTGGTTAGCAACCTGTAGGCCATGGCCCCTCTGGCAAACTTCTCTCTCCAAAATTATTTATATTACGATTTAGAACTAGCGGGATTACAGTTAGGAGGTAGCAACAAAAATAAGGTTGTAGTTGGGGTTCACCACCATAAGGAACTCTTTTTGAAGGGTCACAGCATTAGGAAGGTCGAGACCTACAGCTACTAATGTAATTTGCTCTGCTTAGCCAAATATTAGAAATGGTGGAGACTCATCTAGTCCCTTGGTACCCAGAGTCTGCAGGTACTCCAGTAGTCTGTGTAATGACGGCATACACAGACAAGCCACAGACGTCCTCTGGGAGACTTTATACTTCTCAGAGCACTTGTTCTAATAGAAATACTACATACTACCCATTAGCTTTTCTGCACTGGCACACAATAACGACAAGAAAAGTGTGTGCTTAATTCAGGTGTCTTCCTACAGTCCTTCTATCATCTCGTGTTGGGTGAATCTGCAGATGTGAAACACAGAAACGGTCACCTAGAGTTTGATTGTGAAGACACTACAGTGGTTGTGGTTGCCTGTTGTTTCTCACACGGTTGTGAAGTTGGGACGTTTTTCTTGGTAGTAGATGGGGGTTGAACCTTGGGGATCCTGCTTATGACGTGTGTGCTCTTTCACTGAGCTATGTCCCAGACCCAAAGTTATTCCGCGACATGAAAATAATATTGACGTGTGGACTTCACTGATGCTTCATCCATTTTGATGTGCTGAGGTAGGGTTTTACTCTCATGCCCTGCCTAGTTGAGACTGTGCTGAGTAGCATAGGCTGGCCCAGTGTATTTGACCCTCCTGAGTGCTAGGATCCCAGGCATGTGACAGGCTGTGCTTCTCATCTTCTGATAGAGTTTGAGCAACTTTCCTTATCCTTAAAGCCACAGAATGTGATGGTGGGGATGGGGGAGGGGAAGCGATGGGTGGGGGTTGAGGGGAATGACTTGTGATATCTCTCCATTCTGGTAACCTTGCCTCTGTTCTATCGAAGGGATGCAATTGTCAGTTGTTATTAGTAAAGTTCGCTGTTTTTAATGTGATCGCTCGTTTCCCATTGCTTTGCGATTCTTATTTGTGTTTAAGCTTTGAAATGGATGCGCTCAGAGGTCTCCATTTCTTCCTTTGATTTTTATTCATTTTCGTGCACATGCACTGTGTCTGCACAGTCGTCTGTTACTGTAGGTGTAGGTGGGCACACAGACATGGCGACACGCGCTGAGGCCAAGTGCCAGTGTCAGGTGTCTTCCTCAGTTGTTTCTCCCTGACATACTAACCCAGAATGTGCCGATTTGTCGAACCCAGCTAGCCACCCTGCCCCGGAGATTCCCGAGCAGTCTCCTGAGAGTTGGGATTCCAAGGAGGCCTCTCGACCCACATGGCATTTCCACGAATGCCGTGCCCCCAAGCGTTTGCTCGCCAAACCATCTCCCTTCGTATGAATTTTAACTCGTATGAATTCTTGGAACTTGGTTTCCGTTCTCAAGGCCATCGCCAGCGCTGAGCTGTGAATCCTATGGTTGTGCAGTTCTGTTGCTTCTGTGCACGTGGCGGGAACAGGAATTTACATTTAAGTTATTCCATTCCTGTGCTCACTTGACAGTGTTTACCGAAAAGTCTGTGGTTCTATAACCAAGATTTCTGGTGACATCTGTGTGGAAATGGCCTTTACTTAACTTGCTTTTTGGGCTTTCCCAGGATAAAGGTATACTCATTAGTTATACTGAGTCAACTATGTTATCCAATAGCCTCAACTTGAGGGGAGTCCAAACACCGACAATGTGTGTCAAATAGCCGTGAGGCTGCAGCTGGTCCTTGTGGGTTGAAGGAAGAAGAGCTGCTTTTTAAAACTATGAAGAGGGCTGGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGTAACCACATGGTGGCTCACAACCATCTGTAATGAGATCGGATGCCTTCTTATGGTGTGTCTGAAGATATATATAAAATAAATCTTTAAAAATGATGCAGATGATTTCTCCTGGCAGCTCTTGGTCCTTCCTTAGTTTCTCTGGTTGTGGGGTATGTGTAAAAGGATTTATAAACAGACCAAACCCCAACAGGTACTTGAACATCTCTGGAGAAAGAGTACTGAAAATGAACGACCAGTGTTTGCCAGACTCTCACATCAGTTCATAGCTCTGGGCAGGGACAACCCTGAGATATATGCATTTATTGCTTTTTACTACAATCCAGGACTCCCATCACTTCTCTGGAGACCTTTCTTGATTCAGCGACCTCAGAAATGAAAGAGAACTTTTAGTCAAATCTACTCAAGGTAGCTAGTGTCCATCTGCTGAACTTGTTTTCTAATGTCGTGGTGACTATTCTGTGTCTTTCCTTTTTGTCCTAAAGTTTACTTTTTTTCACTCTATCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGAATGGGGCTGTCCCCGGCATGCTTGTGGAGGTCAGAGGACAACTTGTAGGAGTTGGCTCTCTCCTGCCACCAGGTGGGTCCTCAGGATGGCACTCAAGTTGTCTAGCTTGGTCAAAAGTACCTTTACCCTCTGTAGGGAGCAGAAATCCCTGAGCTATTTCTCTAGCTCCCCAGTATGTCTCTCTAAGCAGAACACAAGCGTCCTGGTTAGGTGGTTTTTTTGTTTGTTTGTTTATTTTTTNNNTTTTTGTCAACTTGGCACAAACTCAAGTCATCTGAAGAGGGAACCTCAGTGCCCCATCAGACATTGGTCTGTGGGCACCTGTGGGGCATTTTCTTGATTGATGATTGATTCGAAAAGAGCCAATCCACTGGGGGAGGTGCTGCCCTAGTACCCTGCCCCAACCTTGTGACTTTCATGTCACAAGTATTACACTGTTCCTCCTCTGTTGAGACCTCACCCGCTTCATCAGCCCCTGTTTAGCTTCTTGACCTCCAGAAACACCCCAAGTGAAGCGTATAGTTCAAAGCTAGGATAGCATATAGGGAGAACATGTGGCGTTTGTCTTTCTGGTCCCCTAGTGAATCTCATTGTCCTTCACAACTGAATAAAATCCAACCATGTGTGTGCGACACATCTCCACTGTCCACTCGTCAGCTGATAGACAGCCAGCTTGGTTCCATTTCCAGCTGTTAGGACAAGAGCAGCCATGGTCATGGACAAGCAAGTAACTGTGACATGTGGCTGTCTGTCTTTAGCTTTCCGAGGAGCCTCTCCGATTCCCACAGTGGCTGTCCCAGTTTACATTTGGCATCAGCGGATTGGTCTCCTTTCCCACATCCTCATCACCCTTTGAGGCCATGTTTTCTTGATTCTCCCCATTCTGACCGTGCCAAGACAGAACCGGAAAGTACTTTACATTTGTATCTCTGTGATGGCTGACGATGATGAACCACTTTAAAAGTACGCCTTGGCCATTCCATTCGCGTTTCTTCTTTGGAGCATCCTCTGCTCAGTTCCTTAGCCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAGGCCGTTTGTCTTCTTTTCGTTTAGTTCTCTCTGCTATCCACTTATGTTTCAGGAGCTGTTGTCCTTCAAGGATGTGTCCGTTGATTTCTCTCCTGAAGAGTGGGAATGCCTAGACCCTGCTCGGTGGAATTTGTATAGAAATGTGATGTTGGAGAATTACAGAAACCTTGTCTCTCTGGGTGAGGATCTCCGTCTACAGAATTCTTAATTGCCTCTTAACAGCGGATTTCCGTCCTCTGTAGACAGTATATGAGGGGCTTCCATTTTGCATGAAGGCAGTTTGTATTTCCACCCACAGAGAAGTATTTAGGGCTGTTATGGTCAGTAGAAGGCCATTTTAATTGTATTTACCCTGAAATCTCCTTTCTTGAGGAATATCTTCAGTCTAGATCAGCAGTTCTCAACGTGTGGGTCATGATACCCTTTCAGGGCTCGAATATCAGATGTTCGTAGTATGATTCCTAACAGTTTAAGATTACAGTTATGAAGTAGTAACAAAACAATGTTATAGTGGGGGCTCACCACAACAGGAAGAACTGTATTAAAGGGTCGCATCATTAGGATGGTTGAGGACCACTGCTCTAAACCACTGTAACTGGCATGAAGCACTGTGCCTGAATCTTAAATTCCATCTCCCCTTCTGCTTTGAGTTGGTCAAGTGCGCAAGCGAAGTTTAGCATCTCCAAGTTGAAAATCCCTCACACATATTCTAATGTATATGTCAGGGAATAATCTCGAAAATCATTTCCTCAAATCTCTTTTTACATTTCTTTTTTTCCAGTACAGTACGGTCAGAGAAATGTGTTTACTTATTAGGAGACTCGTAACTGAACCACCGTTCTCTGTTTGCAATAAACAG
Seq C2 exon
GTCTTGCTGTGTGTAAGCCTTCCCTGGTCACACTGCTGGAACAGATACAAGAGCCTTGGGATGTGAAGGGACAGGAGTCAGGAACCATGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051442:ENSRNOT00000079144:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]