RnoINT0004951 @ rn6
Intron Retention
Gene
ENSRNOG00000026051 | AABR07044362.1
Description
NA
Coordinates
chr20:3139104-3140209:+
Coord C1 exon
chr20:3139104-3139376
Coord A exon
chr20:3139377-3139937
Coord C2 exon
chr20:3139938-3140209
Length
561 bp
Sequences
Splice sites
5' ss Seq
TTAGGTAAG
5' ss Score
-24.36
3' ss Seq
TTCAACTCTTCTCCTCAGAACCC
3' ss Score
-10.95
Exon sequences
Seq C1 exon
TCCCACACTATCCAGGATATGCACGGGTGCTATGTGGGACCTGATGGTCGCTTCCAAAGCGGGCACTATCAACACGCCTATGATGGCCATGATTACATCACCCTCAACGAGGACCTGAGCTCCTGGACCGCAGCAGATGCAGTGGCTCAGATCACTCAACACGAGTGGGAGCAGGATGGTGTAGCTGAGGAATACAAGGCCTACCTGGAGGGCACGTGTGTGGAAACACTCCACAGATTACTGGAGAACTGGGAGGAAACTTGGCAACACTTA
Seq A exon
GGTAAGTAGTGTAGTGTGAGAAACAATCCCACCTCAGCTCCCTTTTTCTCTGGTTGGGAAAGAAAGGAGATAAGGTAGAATCCTGCCTTTGTCCAGCCTCAAGATACAGGGAAGGCTTCTAGTTTTCTTGACTCAGTATCTGAGAGGGAGAGAGGGGCTTTCCTCTCCTTTTTGTGTACCCTTCTCTCAGGACAGCTCAGAGTCACTTTCAGGATGGAAACCGAGACGATCCCTGGAATGACCAACAGTAGCCCCCTCAGTCCTTTGGAGCAGTCGTTTCTCTGGGGCCCTGTTCTCTGCACACACTGGGGTCTGACACTGGCCACACTGACTGTCTCAGATCCACCCAGTCTGGAGCAGGACTCTCTTTGTCGAAAGGTGATGAGAGACATGGAATGCCTAGAAATTCCCAAAGAAAGGACTATCTGGAAGGCTGCTGAGGGTATTTGATCCCTCTCAGGACCCAGCTCTGTTGTCCCTCCATGGGATGGATCACCTAAGCACCTGCAGTTTCCAGGAAGAATGAAAAATGCCTGAACTTTTCAACTCTTCTCCTCAGAA
Seq C2 exon
CCCCCAAAGACACATGTGACCCACCACCCCAGTCCTGAAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGATATCACCCTGACCTGGCAGTTGAATGGGGAGGACCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGAAGAAATACACATGCCATGTGGAGCATGAGGGGCTGCCTGAGCCTCTCACCCTGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026051:ENSRNOT00000036147:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGCGGGCACTATCAAC
R:
GGTCAGGTCCTCCCCATTCAA
Band lengths:
346-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]