RnoINT0004953 @ rn6
Intron Retention
Gene
ENSRNOG00000032664 | AABR07044362.2
Description
NA
Coordinates
chr20:3162438-3162939:+
Coord C1 exon
chr20:3162438-3162549
Coord A exon
chr20:3162550-3162734
Coord C2 exon
chr20:3162735-3162939
Length
185 bp
Sequences
Splice sites
5' ss Seq
AACACAGGT
5' ss Score
-8.64
3' ss Seq
CAGCTTTTCTTCTCACAGGTGGA
3' ss Score
-29.37
Exon sequences
Seq C1 exon
GGCTCCTCCATCCACCAACTCCAACATGGGAATCATTGCTGTCCTGGTTGTCCTTGGAGCTGTGGCCATCATAGGAGCTGTGGTGGCTGTTGTGAGGAAGAGGAGGAGAAAC
Seq A exon
ACAGGTAGGAAAGGGCAGGGTCTGATTTTTCTCTCAGCTTCCTTTAGAAGTGTGCTCTGCCCCATCAGTGGGAAACCCATCCACACCCCCATTGCTACTGTCTCTAACCTGAGTCTGTGTCAGTTCCGGAAACTTCCTAGGGTTAGACTCTCCCTTTAATTCTCACAGCTTTTCTTCTCACAGGT
Seq C2 exon
GGAAAAGGAGGGGACTATGCTCCAGCTCAAAGTAAGTGTGGGGGCAGGAGTGTCTCTGAGGCTCTTGGGGTGAAGCTACAGCTCAGTCAGCCCATAATGGCCCCTCCATCCCCACCCGTCATTCTCACCAACATCTTACTTCTTCCACTGCAGGCAGCAACAGTGTCCACAGCTGGGACTCCTCTCAGGAGACTTGAAAAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032664:ENSRNOT00000048036:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCATCCACCAACTCCA
R:
GTTGGTGAGAATGACGGGTGG
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]