RnoINT0004956 @ rn6
Intron Retention
Gene
ENSRNOG00000062036 | AABR07044362.7
Description
NA
Coordinates
chr20:3126829-3127609:+
Coord C1 exon
chr20:3126829-3127120
Coord A exon
chr20:3127121-3127298
Coord C2 exon
chr20:3127299-3127609
Length
178 bp
Sequences
Splice sites
5' ss Seq
GACCCCGGG
5' ss Score
-23.04
3' ss Seq
GACTATAGCTTCCCGCAGGCTCT
3' ss Score
-27.37
Exon sequences
Seq C1 exon
TCGCTGTCCCCAGGCTCACACTCGCTGCGGTATTTCACCACCGCCGTGTCCCGGCCCGACTTCGGGGAGCTCCGGTTCATTACCATCGGCTACGTGGACGACACGGAGTTCGTGGGCTTCGATAGCGACACGAAGAATCCGAGGATGGAGGCACGGGCGCGGTGGATGGAGCGGGAGGGGCCGGAGTATTGGGAGGAGCAGACCCAGATCGTCAGTGGCTAAGAGCAGATTTACGGAGTGAACCTGAGGACCCTGCTCCGCTACTACAACCAGAGCGAGGGCGGTGAGTGAC
Seq A exon
CCCGGGTCTGAGGTCAGGACTCCTCCACCTCCCGACAAAGGGGCCGGAGGGGTCCGGAGGAACTCCTGAAAAGTGCAGGACCCCCTGGTACCCAACACGTGAGACCCACTTTCACTTTCAGTTGAGGGAATTCCTAGGGCCAGAAGCCAGATGGATCTGACTATAGCTTCCCGCAGGC
Seq C2 exon
TCTCACACAGTTCAGGAGGTGCGTGGCTGCGAGGTGGGGTCGGACTGGAGATTAGTCCGCGGGTACTGGCAGATCGCCTACGGTGGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACCCGGAAGGCCACGGACTCTGCAGCGCAGATCACCCGACGCAAGTGGGAACAGGCTGATTTTGCGAAGTATTACAAGAACTACGTGGAAAGGACCTGCGTGGGGTGGCTCGACAGATACTTGGAGAACGGAAAGGAGACGCTGCTGCGCACAGGTGCAGTGGCCTGTGGCAACTCCTCCCTCTGCCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062036:ENSRNOT00000092692:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGAGTGAACCTGAGGACC
R:
AATCAGCCTGTTCCCACTTGC
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]