RnoINT0004965 @ rn6
Intron Retention
Gene
ENSRNOG00000000423 | AABR07044388.1
Description
NA
Coordinates
chr20:4317440-4318137:-
Coord C1 exon
chr20:4317990-4318137
Coord A exon
chr20:4317806-4317989
Coord C2 exon
chr20:4317440-4317805
Length
184 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTGTCTTTCTGTTACACAGTGT
3' ss Score
7.46
Exon sequences
Seq C1 exon
GACGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTCCCCTGTCGGAGCTCCTGGGCTGCAGGGCCCCTTCAGCAGTGCGGCTAGGTCTTGCCTACCATGTGCATGACCTCATTGGGGCACAGCTGGTGGACTG
Seq A exon
GTGAGTCTAGTCCTGAGACCTGGGAAACTGCAGGGACCAGGGTTGGCTTCCCTAAGTCATGCTTCAGTGAAGCCCAGTTTCTCTCAGTCTTTGTGGTGAGTTCCACAACACTGTACTAAATTCTGAGTATTTTTCACCCTCAGGCTGAGGCAGTTGGCTCCAGTCTTGTCTTTCTGTTACACAG
Seq C2 exon
TGTCCCCACCACTTCTGGAACCCTCCTTCGCCTGCCAGATACGTGAGGAGTCAGCTCTTGGATTCTTCAGCTCACTGAGCGAGGTTCCCGGACGTGCCGCCCCAGGGACTGAGCGAGGTTCCCGGACGTGCCACCCCAGGGTGGCTGTACAAGTCACCACAGAGGGCGCAAGGCTCTGCTGCTGCAAGCTGAGGCTCCCACCTGAGCTGGGCTGTGGGCACTGCAGCCCTTGGTTCCTTCCGTGGGTGTGGAGCCAGGAGCCGAGCCAAGGGGATAAGAAGATGGCTGGAGACACTGGAGAAGGAAGCAGAAAACTCTGCCCTTCACGTCAGACTGAAATTGCCAAATAAAATACTTGTGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000423:ENSRNOT00000000484:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTACCATGTGCATGACC
R:
TCAGGTGGGAGCCTCAGC
Band lengths:
251-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]