RnoINT0004976 @ rn6
Intron Retention
Gene
ENSRNOG00000053116 | AABR07044388.6
Description
NA
Coordinates
chr20:4282996-4283226:-
Coord C1 exon
chr20:4283155-4283226
Coord A exon
chr20:4283092-4283154
Coord C2 exon
chr20:4282996-4283091
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GACACTGCCGTTTCTCCTCAGAT
3' ss Score
-7.77
Exon sequences
Seq C1 exon
AATCTTCCCCTCCACCTGTTTGGCCTGGCTCAGAAACTTGGGCCCATCTACAGGATCGCTTGGGGCTACAAG
Seq A exon
GTAAGCCAGTCTTCTGTCTTTGTGTGAGCCCTTCTTCCCTTCTGACACTGCCGTTTCTCCTCA
Seq C2 exon
GATGCGGTGGTGCTGAACTCTAACAAAACCATTGAGGAGGCCTTGATCCAAAAGTGGGTGGACTTCACTGGCTGACCCCAGATACTAGATGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053116:ENSRNOT00000090245:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCTGGCTCAGAAACTTG
R:
GTATCTGGGGTCAGCCAGTGA
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]