RnoINT0005572 @ rn6
Intron Retention
Gene
ENSRNOG00000046756 | AABR07051241.1
Description
NA
Coordinates
chr3:2512492-2513283:+
Coord C1 exon
chr3:2512492-2512521
Coord A exon
chr3:2512522-2513055
Coord C2 exon
chr3:2513056-2513283
Length
534 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
3' ss Seq
GGGAAACGTTCTGCTTCCAGGGG
3' ss Score
6.43
Exon sequences
Seq C1 exon
ATGAAAGGCACACCTGCCATGTTCTCAAAA
Seq A exon
GTGAGGGTTGCAGGAGCATTGCTGCGGGAGTCGCATTCCTGATACCGAACCCATGTCTTATCCAGATCTTCCATGAAGCCATTCTCATGGGACCTAGGTAAGTAAGGGGAAAGGAAAGGCAGGGCTGGAAGCAGGGGTGGGGCTGGGAATGGGCGAGGCATTCAGGGGGAGGACTGGAAGTGGGCAGGGTTCACAGCAGAGGCAACACCGTGGACCAGGACTTGCAGTCCAAGTGGGCCTTTTGGAGTCGGGGAGGCCTGTAGCCTCAACTGGACTGGTAACGGGAAGGCTCTGCCATGGGGTTGCTGCCTGGTTTGGGTGGAGTGGATCCTTGAAGGCTGTTGTACCACGTGATACAGTATCTAGTTAACAGTTGCCAGCTGGGGTGGAGTAGTTTGGTGTGCTGCTGCTGCTGGGGCATGGGGGACTCATAACCTTGTGGGAGGCTCTTGGGACAAAGTGGAGAAGGGAGAGGAGGTTTCCAGCATGGGGCAGACTCACTTGAGTATGGACAGGGAAACGTTCTGCTTCCAG
Seq C2 exon
GGGCTGTCCTTGCGCATGCCGATGCCAAAGCCTGAGCGGAAGAACAGCTCACCCGTGGTCACCAGATCGCACTTCTGTGAAGCCTCAAACTCCAGCACGGCCGAGTCCCAGATAAAGGCGTGCAGCTTGCTGCCGGCAGGAGCAGAGTCAAAGGAGCCCCGAGTAGCCCGTTCACCCCACCCTGCTCACACTGCAGTAGACAGTCTTCGCTTGTGCTTCCTGGGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046756:ENSRNOT00000074026:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCTGCCATGTTCTCAA
R:
ATCACCCAGGAAGCACAAGC
Band lengths:
251-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]