RnoINT0005670 @ rn6
Intron Retention
Gene
ENSRNOG00000054632 | AABR07051882.1
Description
NA
Coordinates
chr3:25429558-25430792:-
Coord C1 exon
chr3:25430551-25430792
Coord A exon
chr3:25429769-25430550
Coord C2 exon
chr3:25429558-25429768
Length
782 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TGTGTATTTCTTGTTTTTAGTCT
3' ss Score
8.18
Exon sequences
Seq C1 exon
TTAACTGGCAGTCTTCCAAGACTGAACATTAATCTTACCATCTCCTATTACAGTCCCTAATCAAGATATCCCAGGGGTGATTGCACTAACATTGTTTGAAGACTACATCTACTGGACTGATGGGAAAACCAAGTCACTCAGCCGTGTCCATAAAACCTCGGGAGCAGACAGACTTTCACTGATTTACTCATGGCATGCCATCACAGATATCCAGGTGTATCATTCTTATAGACAACCTGATG
Seq A exon
GTAATTATTCTTTCCATGTTTCCATAATGCATCAACATCTTCCAGTAACATTTCATTTTTTATTATTTCAAGGTTAATTATAATTTCATTCTTGATAAGAATGATCAGATATCATTGTTTAGTTTTATTTTATTGAATAAAGCCAGTTCACGTCAAGTGCTTCTATTGAAGGGTGTGATTAGATGATCGATAATAGTAGAAAGACATAGGGATTTGTTCAAACCATACTAAACTGTGTTGAAAACAATGTATGTAGTCAGAGAAGTGAAAGATTGGGTCATTAGAATAATTCATTACTTTCGAGTTACAGGGTTCCTAGTTTCCAGAACTCGGGTTACAAAGAATTCTATTTCAGTAGTTTGGAAAATTGGAAATATTTAATATGCCTCATAAGATTCTACAAAACCATGTGGTATAAATATCTGATTGCTTTCCTGTACTAAAAGGCGAAATGCCCTGATTTTTGTGGTAGTTCATCATCTCACTTCTTTATTTCACATTTATATTTCTGATCATATGTATTATTTCGTCACAAATGCCTCTGGTCTTTACTTTTTTGAGAAGTGATTATTTTTAACCAACGTGTTTATTTTTGTAGAAACCATTTAAAATTGATGAAATCACAATTGAATAGCAATCCAAGAATTTGTCATAACTTTACTAGCGGCAAATCACAAAGGTTTATTTGACTATAAGTTACAAACTTGAACATTCAGTCTCAAACATCATATTACATTACTGGTCTTGATAATTTTGTTTTGCTGTGTATTTCTTGTTTTTAG
Seq C2 exon
TCTCCAAACATCTTTGCACGGTAAATAATGGTGGTTGCAGCCATTTGTGCCTTTTAGGCCCTGGGAAGACGCACACCTGTGCATGTCCTACCAACTTCTACCTTGCAGCTGACAATAGAACTTGTTTATCCAACTGCACAGCAAGTCAGGTGAGTTGAGTTCTGAAACCATCTCCTGTGTAGATTGTGTGTGCTGTTATTAATGTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054632:ENSRNOT00000089075:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAATCAAGATATCCCAGGGGT
R:
AACTCACCTGACTTGCTGTGC
Band lengths:
344-1126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]