RnoINT0005737 @ rn6
Intron Retention
Gene
ENSRNOG00000061770 | AABR07052508.1
Description
NA
Coordinates
chr3:58380243-58386375:+
Coord C1 exon
chr3:58380243-58380360
Coord A exon
chr3:58380361-58386334
Coord C2 exon
chr3:58386335-58386375
Length
5974 bp
Sequences
Splice sites
5' ss Seq
TGGGGACAC
5' ss Score
-7.19
3' ss Seq
TGTTTCTCTTTTTACTGGAGGGG
3' ss Score
-2.96
Exon sequences
Seq C1 exon
TCCAGAATCCCAGGTCCCAGGAAGACAGCAGTGTTGCTGAGGCCCCATGGCAGCTTGGGTCCAAACAGGGCAAAGCTTCAGCCAACAGGGCCATCATCTTCTCATGCTCTAAAGATGG
Seq A exon
GGACACTGCTCTGGTAGCTGTTCTTGTTTGTCCCTTTCCTCTTGTTCCCCTCCTCTCCTTTCGTTCACTTCTTTTCTTCTTTCTTTGTCTTAGATAAGGTATCTGCTGGCTGACATGGAACTCACTATGTAGTTCAGTCTGGCCTTCAATTTGAAATCCCCCTGCCTCAGGTTCTTAAGTTCTAGGATGATGGACATGTACTTCCATGCCTGGGTCTTCTCCTTCCCTTTGTTAAGTTTTCTGGGTTGACACGTGCTCCGAGTGACAATCCAACATCCTCAGCAGAGTCTTCGACTCAGCTGTGGTCCCACCAGTTGTGGGTGAGTTATGGTGTAAACACAGTGCTGGGGGCAATACCTGTGGGAAGAAATATCATGGTCAGGGGGAGGTCTCAAGGAAAGCAGATTGCTGTGGGCTGGACAGATGTGTCTGCTCGTGTATGGAAGTTCTACATCCCTCTTCCTTTCCGCCTTAATATCTATCTGTCATAACCACTTGTCAGATGGCTTCTCCTAACCTTTGGAAGTTCCTGGAAACTGAGGGCTTGGCCTACCCAGTTTATACATCAGCAGTTGCTTCAGTGTTCCGTGTCTTAGGAGAGCTGCAGAGGAGACGGAAGCACGGTAATAGCATTTTCTCCAATCTGTCAATATAGGACATAGTTATGTTCTATAACTCAGAACTAATAGAACTTTAAGAGACTTGAGATGGACAGGATGAGACATCCCTAATCAAGGATAAAATCGTATTGCAAGAGGGTCCTTTGGTATTAGTCTGGGGATCTCTCAGTTTCCTGGGCTTCCAGAGACTCTGCACATGGAGAAAGTAATGCAGGAGAAATTAGGAGATGAGTGTTTGGAGAGCTGATACACAGTCAAGGTTCTTTGCTGAAGCTCCCTGAGCTGGCCTCTCCCTCTGTAGTTGTTGGTCTAGATAAGATTGTGCCATGTGGCATTTGAAAGTGGCCCTTTGAGAAGAGGGAAATTATTGAAATATGTTAAACTTGGCTGTTTTCTGTTTGATATCAGCATTATATTCCTAAGGTTTCGTGAAATTGTTTATTATAACCACTTAGAGAGAACAAGATTCTTGAAGAGGCAAGCCCATGCATCTGTGAATAAATTGATAAAGGTATTAACAGCTGTGTGACTTCCTGGGGAGAGGCGAACTAACTTGCTTACCCTAGATGAATGCCAATGTCAGGCCAAAGAAGCAATTCCACCCAGGTCTCATTTAGAGAGCCAGGGGATTAACAGAAGTGACTTCACAAGACTATGGGTGAGGAGCATAAGTAACATGAAAGCACAGAAGGGGTCCCCAACATGGGTGCTGATGATAGGGTTAGGAAGTGGCCTCCAAACCAGAGCTTTGTAGCCTCCAGAGCAAGCAGCAGGGGTAGACTGAGTTAGACAGCCAACCTCCATGGTCAACTGGACGATCCTAGCTGTAGGGGAAGTAACAAGAGAGAGCAGAGCGAAACCCGAAATCCGCAGGGGCATGGAAATGGACATGAAAAGCCCGGAAGCCAACAGGGGCAGAGATCAGGTGCAGTCCTAAAGGACAATCAAAGGAAAAACCGCCTTCCTGTGAGCCACACCTGTTAGAGCTAGCCATAAGACAGTAGGGCAACTCCCAAGTGTGAAGGTGATCTAATCAACGCCATAGCAACTAGAAGCTGATAGACAGTAGTGGATGCAAACTGTCCTATGGCACCTTTTGACAGCCAAGTGTCATCGGCAGGAAGCAGAGCCCTGGCTGGTCTGATTAGGATTGCTTCTATCTGGCTCAGCTTCCTTCTATCCAGACTTGGAAGCACCTCCCTGACACATCCCATTTCACACTTCATTTACTTGCACACGCATCCTGCCAATCAGGGTCTACTTGGCTTTATGTAGCCAAGTGTGTCAGGGCTGGAGAGAGAGCTCAAGGGTTACGTGTTAGGTCCCAAAGGCAGGACAAATGGCTAATATGCCTTTTTTAACATATCAAACAGACCTGGCCACGAGGTAAGGGAGAAAACAGGCTAGCTCTTTTGTCCTCTTTGTGCCCTTTTGGTCTCCTGGCTAACCCTGGCATCTTGACTCCTGGCTCCCCTGCACCCCCCGCCCCCACCTCTCCTCATTGGGCTCAGTCTGATGGTCTTGTTCTCTCTGGACTCTCCCGGATGGGTCTGCCTCTGCCTGTGCTCTCCTTTACATCCATAATGAAAGCCTCAACCTTTAGGAGCAGTCCTGTGGCCTTTTTCTGTATCTTTTTTACTCAAGGAGCTATGGCTATTCTTCCTGAGGACCTGGGTTTGATTCTCGGCACCCGCGTGGTGAACCACAACCATCTGTAACTACAGTTTCAGGATTGGCATTCCTGGGACCAATAAAGGGACTCTAGCCAGCTGGACCATGGCAAACAAGGCTCTGACAGGTCTTGTCCTTCCCCCACTCTCTCTGCCTTGCTAGAAACTGTTAGATTACATTCCTAAAGCTAGCCCCCAAGGTCTATTCCCTCATTTGGCCACTTCCTCCCCTGAGGCTGACTACCAAGGTCCAGCTATCAAAGTGCTGAAGTCCAGCAATGAGAAGCCGCCTTTTGGCTCATCTTATAAACCGCCCAATTAAAAGTAAACACTTCACCCTAACACAGGGTTTCCCCTTTTACATTTTTTTCCCTCTCCTTTTTCTTTTTATTAGACAAGAGTTTCTCTGTGTATCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGCTTCAAACTCTACCTGTCTACCTGTCTTTGCCTCTTGAGTGCTGGAATTAAAGGCGTGGACCAGCACGCCTGCCTCCTAAAACCTGCCATTTGCCTATGGGCTATATCTGTGTCCTTTGTATCCAGAGTTGTCCCTCTAGGACAACTATCTCTTCCCAGACAAATCTCTGTTCCCCATCTCCCTGTCATGGCTTTGAATTCTAATTTGGAGCTTGTAGGTTTATTTAAGGGACTAAGGCTTTCCAGTTCCACGGAAGCCAAATTTAGTGTCAAGTTTGACCTCGTTGATAGCATTCAGGCAGACTTAGGTCAGATTCATCCTTGAAATGTAACTATTCATAGCACAAGGCTGACATCACACCCTGCCTGATAAGGCCGCTGTCTGTCCTGTCCTGCACGTGACTCCTGCACCTCTGACCTCCTAGCACACTGTCTTAGAGATCCCGACAGTTCTCACCAACCTAAATGACCTTAGAGGTGTCTGCAGAACCTGGAGGTGACAGTCAGGACAGAAAGACCTGTTCTGACCGGTCAGGGGCATCCCGAAAAGGCACAATGGGCCTTCCTAACGGTCTGGGGTGGCAGAGAAGCACTGCTGGAGTGTTGTCATCAGCCTCGGGTGTCTAATGCTCTCCACATCCTCAGCCTGCCCAGTCTTGGACTCAGCCGCTGGTACCGCTTCTCACATGTGGCGCCACTGTCTTTGTAGCGGCCATTTTAAAGAGGTCAAGACCCATTTAGGCTTTCTACCTTGACAGGAGACTGAAAGAACTGGTGTGGTGGATTGCATGGAGGGGTGACCTTGAAGGTGCTTCGCAGAGTGCAAACAGCATTCAGACTTGAGCCCAGACCATGGGAATAGACAAGGCAAAGCAGGGGTGGAGACTGTGTTTGGCTAGCATGCAATGGCCTGCCTGACTACTTCATCTTCCATATCCCACCATTAGCATCTTGAGGAGCAGTGTGAGAGGTATCCCACTTAATATATGTCCCCTCTGCTCCATCCCTGTGGTAGAATAATGGTTCCAAGCCTGAGCAGCTCATTACCTCCCATGGAACAGGAGTGATTGTCAATGAGAATGGTGGCTGGGAGTCTCTTCTGTTAAGCTGGACGTTACCTGGGTGTCCATGGATGGATGCCAGAGACCATACGGGATACAGCACAGCTGCCGGAAACCATATTTTAAAGAATTTGACTATCTAGAAAGATACTCAAGATGTTAAGAAGAACAAATCACATTATTTGCAACACACAGTCTCGTATTTGTAAAACCCTACACAGGAGTCTGTGTATTTATATACACATATGGATATGAGCATTAAAAAGGCGAAGGCAATCTGTTGTGTTGGAAAGGCCTCTGTCATGCGGCTCTGTGGGTACTCATGAGGAAAGGAGGCCAAAGGTAGGTTCTGCCGTGGTTACTGAAGGGCTTTCAAGGACAGAAGGAATGACTGTACATTCTAGCGACTTGAGAACTTGTTACACCTCCCCGCCCCAGGTCCCACCCTGGAGACCGAGAGTTGGTGAGGCAGGCACCGTGAAGGGCAGATCTCAGAGGTGGCTTATAGAACAGAGAGCCATCCAGCTGTTTGCTCAGGTGGCGACATGGTGGAGAAAGGTTCCTGGTTCACTAGCTGCATGCTTCCTAGCTGGACCCTGGCACAGCCGCCCCATGTCAGCCACTGTCCCATCAGAAGGATGCTAAGCAGAGCCCACTCAGAGCGAAATCTACCATGCTGTCTCTCAAATTATCTGACCGGGTTTCTTTAAGGCCAAGGACAGGGCCTGGTTGGCATGAGCCCCAGGAGAGAGCAGCTGTAGAGATGGGATGTGTGTGAGTCCCAGATCTTTAGAGGGAGACCATAGAGCAAGGTGACTACAGACCCCAGGTCGGTTGACTTCCTGTGGAATGTGTGCTCCAGCCAACCTTATTTAACTCTCGAAGGACAGAGTGACATCAGCTGACATCTGGGCAGCACTCGGTATCAAGGAGTTGCTAAGAAACTACACTCACTGCATCCATGGAGATCCAGGAGTCGAAAGGAACAGCCCGTGCATGATTTCAAACCAGAAAGTGTCCAAGTGTCTCACAGGAAGAAACAAATCAGGTGAAGGTCGAGGCCGCCCCTGCAGCCTCCACGGTAACTGTGCCTTCCTAAGGATTGAGAGATGTTCTACCCTGTATGCCTTGCTGTGCAGCCCCACGTCCTATCTAGGGCGAGCTTGAGTGTACAGGCAGGAGAGCACCTCCGTGCTCGGGGAGCTGGCCCACAGGACTGTGGAGCTTGCCTGGGCTTCCTGGACAAAATGAAGGCTTGTGATTCCATCTGTTCTGAGCCTGGAGAAGAGACATGGGAGTGATATATTATTTGGACTTAAATATTATAACCATTTATCGAGCAAGGTTCTGGAAGAGGAAAGCTCCACGCATCTAAGAATAAATTGCTAAAGGTATTAGTGAATGTGTGAATCCCTGAGAGTCCCTGGAAAGCTTCAAATTGTCCAATACTGTGCTGCACCCTGGTCCAGCAGCTGTTCTGCTCACATAGCTAGAGATAAAACAAGATCCGATTGGGAACCATCCTTGAACCCCCACTTCCTGCAGCAGTCCAGGGCTGAGGTGAGCCAGACAAGAGTAGCTGTGACCATGATGAAGAAGAGGACAGGTCACAAAAGCCACGAGGCCAGCATGGAGCTGAGCAAGCCTTGTGTCCCAGTCCTGACAGTATCATAGGCTGCCGGATCCAGCGTTAATGTGTTAGATGTAAAACCTAGCTAGCCCATACCTCAAAGGAATGGGGCCGGGGGAGGCTACACATGGGTGACCGTGGCCTGAAAACACGGGTTCAGGTTATCTCATATGACATATTCCACCGTGGAAGTGGTTACAGACTCTCCATTAGTTACAGAACAAAGAAAGTCATAAATCAAAGCATTTGTCCAATATGAAATACATTTGGGGAGACCACAAGTAAGCGCTGACTTAGGTTTCAGATGTTATCTGATGTCAGGCTTGGCCTTTGGATTGGTGGAAGCTAGCGCTCTGCTAAGAACAGGCTGTTAGGTCAGATGCACAGGAGTAGGCGATGAATGGCATTCAAAGGAACTAAAAATAGCTCTGCGTAATTCGGTCGGCAACATTCTAACTCTTTATGATCTCAGTCAGTCATTTGGCCTTGAAGAATCTTTAACACAGGTGTGCGACTCTTCTGTTTCTCTTTTTACTGGAG
Seq C2 exon
GGGAGAGTGTGACCACCTTGCAACCCACTGGAATGGGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061770:ENSRNOT00000088345:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]