RnoINT0006194 @ rn6
Intron Retention
Gene
ENSRNOG00000021900 | AABR07055834.1
Description
NA
Coordinates
chr7:10772761-10773887:-
Coord C1 exon
chr7:10773808-10773887
Coord A exon
chr7:10773001-10773807
Coord C2 exon
chr7:10772761-10773000
Length
807 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTTATTTTTTTCTTTAATAGGTA
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTGGGCTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAAAGATGTGATGCTAGAAACATGCAGGAACCTCACTGCTATAG
Seq A exon
GTAAGAATGTGAGTTTTCCTTCACTTTCTAAACAAGGGGTCAAGTGTTTCTTGGTTATTGGTGCACTTCTTTTATTTCTACTGTGAAAGAGGAAGAGTGTGGTAAATATAAATACTCAGACATGATTCTCAGGTTCACCAGAGATACTAACTTAAAATTTGCGCATTATCCAATAATATATCATAAATTTTCTGGTACTTATTTTAGGGTATGGATTGGAAGACCATAATATTGAAGAACACTATCAAAATTCTGGAAGACATTGGAGGTAATTTTTATGTGCAAGCTAATATAAATGTATCACTATAGAAATTTTAATGTACCTTGAAGTTTTAATGAAAATCAACAGTGTGAATAAACACAGCTTTAAGTATACTTATAATTAGTGAATTCTCAAAAGACCATGTACTTGAATTTCAGGTAGCTGACCTGTGTTTGCAAAGCATTCTTCTAAAGAAAAACACAAATAATATCTTAAAACATGACACCATTTTAGTCCTGAGAGCCATATTGTAGAACTGTCAATCCATTTAGTTTCATCCTATTTGAGTATCATAAAAAGCATTGATTAGGGGACCAGTGTATGCCTTTTTAAAAGCAAACAGTTCATAGTAAAGCTATTGCCATTCTATACTTAGAGTGACTTTCCAGAGTTTAGTGAGAGCAACAACTTATGGGAAACAAGAAGGTTGATGTCCTGGTTGGTGTCCTATACACCCCTATAGCACATGTCCGTGGGGGAGAAAAAGTTCACTTTTGTGAATGCAGTGTAAAAAATCTTTTGTTTGTTATTTTTTTCTTTAATAG
Seq C2 exon
GTATAACATCCGTCATTGTGGATACAAGCCCTGTGAGAATAAGGGCCATGGAAAGAAGCAATGTACCTTTGCATGTAACAATTTTCTTCAAACATATGAAAGAGTCTATACAGAAGAGAAACCCTATAAGTGTAATCAATACAGTAAAGCCTTTTTAAATTTTCATAGTCTTCCACAACATGCAAAAAATCATCCTAGAGAAAAACCATATGAATGTGGTAAAGCTTTTGTAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021900:ENSRNOT00000042386:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTTTGCTGGATCCTTC
R:
TGGGACTTACAAAAGCTTTACCACA
Band lengths:
319-1126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]