RnoINT0007665 @ rn6
Intron Retention
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59564498-59568036:-
Coord C1 exon
chr9:59567911-59568036
Coord A exon
chr9:59564802-59567910
Coord C2 exon
chr9:59564498-59564801
Length
3109 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TCTATTTTTATCTCTTGCAGGAA
3' ss Score
11.61
Exon sequences
Seq C1 exon
AATGGAAGTCTTGCCAAAGCCGTGGAGGAGGTCTTTCCTATCTGCATGTAGTTATATTAGGGACCACTTGAACGCTATGAACCCCACTATGCTGGCTGTGCTGGATCTGTGGCACAGCACTTTTAA
Seq A exon
GTGAGTATTTTTGGGCTTTTTGAAACTAAAAACAATTTTATTTAATGTTTATGAGTGTTTTGTCTACATGTTAAGTGTGTACTATGTGCCAGGTGCCTGGGGAGGTCGGGAGAAGGTGTTGGATTTCCCCAGGCCTGGAGATATGGTTAGCTGTAAGCCTGAGGTGTTGGTTCTGGAAGATGACCTGGGTTTGTCGAATTAACCACCGAACCATCATCTATGCCTTCTCACTAAAATTTTTTTTAAATGTCATTTTTAGTCCTATCTGATTTATTTCTTTTATTCTTTTAATTGTAAATTAAAATTAATTACGAATGCAAATACTAAAGCATGATTTTGGTAATTGATATGTAACATATAGAATAATAAGTGAACACTGTCTTTTACATGTGACTCACTGTATTTGTCTTCTCTGTCTAGTCACCATATGTGCTTTCAGGATACTCTCAGCTCAGGGACTCAATGTCTTCACCTTGTTTTAAGTGACCCAGAACATTAGCGGCTGCAGTGCTCAGAGCAGTTTATAAACCTGATAAACATTGCCCAAATTAATAGACTGCACTGAAGTCCCCTGACGGCTGGTGGGGAGCACGGCCTGCCTCCCAGGTGTCATCTATGGGGCAGAGCATCTGTGGGCAGGAAGGGCTTAGCAGAGGTGCATATAAAGGTTTCTTGGGTCCCTGGAACAAAACGGTTTGCTCCTTCAGCAGAAGAGGACCTGCCATGCCGCATGGGAACTCTAGCTTCATGTGCTTTCTCTCACATGCCCGTTACAAGTCTCGCAGAGGCACTGCAGCAGTAAGCGGACATGGGCGCATGCTTTAAAATCAGCTGAAGTAGAGAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCAATATGTACAACAATGCCAAGCAACCAGAGCTTCCAGGGACAAGCCACTTACTAAAGACTATACATGGACTGACCCTGGACTCTGACTCAATAGGTAGCAATGATATCCTAGTAAGAGCACCAGTGGAAGGGGGAAGGCCTGGGGTGCTAAAGACTGACCCCAGTTGAACTAGACTGTTGGGGTGGAGGCGGCAATGTGGGAGGATGGGATGGAACACCCATAAGGAAGAGGAGGGGGGAGGGATTAGGGGATGTCTTGCCCGGAAACCGGGAAAGGGGAATAAACACTCGAAATGATATATAAGAAATACTCAAGTTAATAAAAAAAAATTAGCTGAAGTAATGCAAATTTAGATTTCTTAAAGGCAATCTTTCTTAAGACACCTAAAACCTGGAGCGTCCCCAACCTACGATAAATATGATGCCACCCTTTGTCTCTCCTCCTGACAAGCCAAACCAGTGACACACTGAACGGTTTCCATGCAGTGGACCATTTTCTACATTGTTCTGTAGTCATTTAACCACATGCTACAGAAGCCCCTGTGGCGGTTTGAATGTGCTTGGCCTAAGGAGTGGCACTGTCAGGAGGTGTGGCTTTGCTGGAGAAAGTGCATTACTGTGGGGGTGGGCTTTGAGGCTCCACCCAGTGCAGAACAGCCAGTCTTCTAGAAGCCTTCAGATCAAGATGTAGAACTCTTAGTTCCTCCACACCACGCCTGCCTGGACACTTTATTGCTCCTGCCTTGATGATAATGGACTAAAACTCTAAACCTGTAAGCCAGCCCCAATAAATGTTGTTCTTTTTTTTTAAGATTTATTTTATTTATATGGCAGTACACTGTCGCTGTCTTCGAACACAACCAGAAGAGGGTATCAGATCCCATTACAGATGGTGTGAAGCCACCATGTGGTGCTGGGAATTGAACTCAGGACTCTGGAAGAGCAGTCAGCGCTCTTACCCACTGAGCCATCTCTCCAGGCCCAAATGTTGTTCTTTGTAAGAGTTTTGGGTCCTGGCGTCTCTTCACAGCAGTGAAACCCAAACTAGACACCCCACACTTACATACATCCCACAGACACACGCGTCATACTTGGTGATTTGTTGCTAACATCTTAAAGCGTTGTTTTAACAAACATTTTACATATGAATGAAGATATTCCACCCATCCCCCCACCCCCAAAGTATCTTACAAGCCTCCCAGTGTCTAATCTGGGCTTCAGATAATCCTGTGCCTTTAGAAATTCACACGGGGTAGGATTTGGGGCTTCTGGGGCTTCCTGGGCAGAGACTTCCCCTCTCCAGGCTCTTCTGCTCCTTGGGGCTACCTTTTGAAGAGATATTGGTACTTGGAATTAGATGCTAGCTCTGAATGCTTCGAGTCTTATCGGCCTCCACCCCACCCACCACCATCCCCCACCCCAGCCCCGCTTTTTTAACCGTTCTGGTTTCTGTGAAAGCCTAGTATAAATTCTCACCAAATTCTAGTGCTACAGTCTTGCCTTTTGCAGCGATCCTCCACAATGCCATATTCCTGTTGAATCTAAATATATATACTATTTTAAAATTTTAGTCATTGTTATGGTTTGGATCTGAAAGATCCCCTACAAGGCTCAAATGTTTCAACTCCAGGCTTGTTTCAGTTCCTCAGTATTCGGAGGTAAGGCTTTGGAGAGTGACTGCATGGAAAGGGCTCTGTCCTCAGTAGATGAACCAGTTTGAGTTCACCATCTGTAGTCCTACTGGGAAATGAAGGAAACTCAGGAACTAAGGAGGCAGGGCATAGCTGAAGACTGTGGATCCCGGAGGCATGCCCCCTGGGACTATCTTGTCCACAGGCCCTTCACTTTCAAAAGCTTTGTCTTTCTCCCCTTTCCCAGCTGCTGTGGCCTGACTCCTCCCAACGGCCTGGAGAAGAACACTTCTCTGTCATCTTCGTCCCTCCACAGGTCTTAAACAAGAGAGCCATGCAGCAGACCATGAACTGGAACTTTGGAAACCAAGAGCCCAAACAAACCTTTCTGCTCTCTGCTCTTGTTTTTCTCTGGCATTTTTGTCACAGCAACAGAAAGCTGACCACCACAGAAAATCTCATGCTCTTGACAATTCAATATAGAGTACAGATTTTGATGGAAAATCTAGGAATATGGTATTTTCTTGGAACAAACAAATTAAGAAAATCATAAACACCACAAAATCTTTATCTTAAATTGCTGTCTATTTTTATCTCTTGCAG
Seq C2 exon
GAAATTACGCCTAGTTGACATAGAAGAATTTCACAACCGTCAGGATGCATTAGAGCTGTCGGGATTTCAGAACATTGTCATTAAACACATGGAATCCGCCAAGGAGACTCTGCTTAAAACGTAACGTTTCAGTAGGGATGTTTAAGTTTAGAGATGTGATTGGCAAAAGGTTTCATTTTAACAACTTCCAGAAAATCCATCTCAACAGTTTTTAACACATTTCTGTCTCAGAGTTAAATTTGTCCTTAATTATCTTGGTGTGTAACACGTCCAGATGTTGTAGACAGCCACGAGTAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194:ENSRNOT00000081963:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]