RnoINT0008689 @ rn6
Intron Retention
Gene
ENSRNOG00000054624 | AC096792.1
Description
NA
Coordinates
chr7:133112808-133114748:+
Coord C1 exon
chr7:133112808-133112964
Coord A exon
chr7:133112965-133114622
Coord C2 exon
chr7:133114623-133114748
Length
1658 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTGCTGCAATTCGATCATAGCTG
3' ss Score
4.4
Exon sequences
Seq C1 exon
GTGGACCCCACGACTTATTACAATGCATGTATTGAAGAAGCCTGCTCTTGTGACATGGAGGGGAAGTACCTTGGCTTCTGTACTGCTGTGGCAATGTATGCCGAGGCGTGCAACGCAGCCGGAGTCTGTGTCTCGTGGAGAAAGCCAAACCTCTGCC
Seq A exon
GTAAGTGAACGCTGGTCTTCTAAAAGGTGTAGTTAGACAAAGGCTGTTTTCGTAGATGACTGCTCTTTCTCTCTGATTCCCCATTAAACACAGGTTCTTAAATCTAGAGAGCTGGAAAACTCCCTAACATAGGTATTCATGATGGTGAAAAAACCCAACAGAAGTAACACAAAGTATGTTTTTTAGTATAGAATAGAGTTTATTTAGGGCATGGGGAGGGGAGTTAAGAGGGTAGTAGGGGTGAAGAGACAGAGATGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGAAGAAGAAGGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGGAAGAAGAGGTGGAAGAGTAGGGAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGTGGAAGAGTAGGGAGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAAGAGGAGGAGGAGGAAAGAAGAAGAAAGGTTTAACATTTTGTGTTCAACTTTAGTTAGAAAGATGAATTTGTTCATAGAGGAATCATATGGAGTACTGATGGTGAATGTATCCCCGCCCTTGATGAATGATGGGTTTGAGTGTTCATGTCTCCTAGGCATGAGCTTCATGTACTACTCTTGGTTGAATTCCCACATATATTTCCTTGATATGCCACCTTACTGATAATGAACTTGAACATGAAATGAATCTCTATACACAGAGCCACATAACCATAATAGAAATCAACCAGCCCTGTCCCCTGTAAGCAAGGCATGATGGGAGATATTTTAAATAAATTAGAAGCATTGATAAGATAAACACTGTATTCCACTTACAAGATTTACTGATGTATCAGCCTCCTTAATTATCTTATTTGAAGAATGTTACATCTCAAAAGAACTTAATTTTCTCAGAATCTTAGTGAAACAGTATTCGCTGTAGCCCAGGATCCTCCAGAACTCCGTAGACAGCCCAGGCTGGCCTTGGTCTTGTAGTGATTCTCCTGGGAAAGCTTCTTCAGTGATTAGAGTATAGGAGTGAGCCACCAACCTGCCTATCAGTCCCTCCCCCTCCAAAAAGAGGGATTGCCTAAGACCATTAGAAAACAGATATTTACACTATGATTTGTAACAGTAGCAAAGTTACAGTTATGAAGTAGCAATGAAATAATTTTATGGTTGGGGTCACCACAACATGAGGAACTGCATTAAAGGGTCACAGCATTAGGAAAGCTGAGAAGAATCTCCAGATGATGGCTTAAAGAATCTCCAGATGAGCTGTAAAAGGGAAAGAGGTAACAAAGTCTGTAAGCAGCCCCCCTACATGTGCACTGTGTTGGACTATATGGCAATTTAGATAAATCCAAAGACGCTTGATGTGGTGAATGACACGTAGTCAGTCTGTCACTGGTGTCATAGGATCCTTGAAGAGAAAAAGAAGAAGAGAAAGAAAGGGGAGAGGGGAGAGGGGAGAGGGACTATGTGAGGAAGGAGGAGGTGGCTGGAGGAGATGGGGCAACGATCAGGATGTAAAGTAAATGAATAAATTAGTGGACAAAAAGCCAAACAGGAATTAAAGGTAGTCTTGGAAATTGAAAGGTGGGAACTGCCACACTAGGGATGAAAGTAATTTGCTGCAATTCGATCATAG
Seq C2 exon
CTGTGTACTGTGACTACTACAATGCCCCTGGGGAGTGCAGCTGGCACTACGAACCTTGCGGTACCGTGACAGCCAAAACATGCAAAGATCAGGTCATCGGCCAGAAGTTTTCTTCACTTTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054624:ENSRNOT00000085280:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCCCACGACTTATTACA
R:
AAAAGTGAAGAAAACTTCTGGCCG
Band lengths:
278-1936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]