RnoINT0008783 @ rn6
Intron Retention
Gene
ENSRNOG00000058214 | AC098462.1
Description
NA
Coordinates
chr1:63300053-63301747:-
Coord C1 exon
chr1:63301602-63301747
Coord A exon
chr1:63300177-63301601
Coord C2 exon
chr1:63300053-63300176
Length
1425 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACA
5' ss Score
5.3
3' ss Seq
CTCTGCTCATATCATGACAGGAC
3' ss Score
7.15
Exon sequences
Seq C1 exon
CGTCTGGTGTGAGAAATTGGTCAGGATTTCAAAACAGATCTGTACTTCCAGATTACAGCTATTGGTGCTTTGCAGCAGGCAAGAGAGGCCTATCTGCTTGGCCTTTTAAGATACCAACCAACTTGTGTGCTGTCCATGCCAAACGG
Seq A exon
GTAACAATTATGCCAAAGATATCCATCTAGCATGCTACATACACCGAGAATGTGCTTACTAGTCCACTATGAGGGGAAACATTTGATTCTCAGAAATTTTTTTTTCTTCTTCCTGTTATCAGTTCTGAATGTTAGAAATTTTTTCCATGGTGTCAAAGGTACCTAAGTATATGATAGAGTAGAAACATAGTGGACAGAATCAGGTATTGGCAGTTTCTTCACAATCATTTGTGTTTAAGTTTTTCAATACAAAAGTGAGCTATAAAGCATTAATACAAGCAAAATATTTCAGTAAACACTTTGTAAAAGTTCAATTTTATAACAATTATAACCTGTTAAAATAAAAAAAAGGAGCTGGGAGGACAGTGGGAAGAGATAGTTATAGCTGTCCTGCACATTATTGGGGCAAGCCTTTAGAGAAATCCTTTGAAATAATTCCACACTACCTGATTCAGTTTGACTTAGCCTATATACCAAGGAGCCAAGTCCTCAGTTGAATCATATGTTTACCTTGCAGCTATTGGTGGGAGAAGGAAGAGGAGGAGATGGGACAGTAGTGCTTTTTACCCTGCCCAAGTTGATTACATAGTCTATTATGTTCTGTGCCCTTGGAAACCAATCACAATAGAAGTCAGTAGAACTGTTTTGTGTATTTACCCACAATAAGCTTGGACCTGAACAAACCACCCAAAAGGACTTCCTGCACCTCTGTATACACTTTTATGGTATTTATTTTATAAGCTGTTCCTGGAATAGACCCCAACATAAGAGACACCTGCACCAATATAAGAAAGTATTTGGAGTAAGACTTACATTTTGAGTTGGGGGTCAGTAAAGTTTAAGTTCCCAAGGCCTCCCTGGTAACTGACATCCTATTTGCAGAAAGAGACATGTACATGGATAACTGGAATCCTTGTTGGCAAGTTAAGACATGAATGTTAGACAAGTCATATCCTGGTTGACAAATGAATGTTAGGCAAGGCAAGTTCCCTACCACAGTTGAATGTCCTAACCAATGGGAGCAGGATACGTGTACAACAAAGATAATATTCTAGGAAAATCCCTTTTCCCTAAGCCCACATTGATGGAATAACTTAACACACTTGTTTGTAGAGTTTAGGTTTAAAAGCCTGTAAGGTTTTAACTTAAGCTCACAACTAGCTCTCAAGTTGGGTTTGTGACCCTGATTTTGGGGTATATGATCAATAAACTATTTCTGTCTGATTGAGATCAGTGTTCATTTGTTTGTGCGGTGACTTCTGGATCACAACAAGGACCATTATGAGAGTGGGAATTAGTGTCACCAGTGATCTCCCCTGGTGGGTACTAGGGAAGTATTTCAGGGGAAGAATGACTTTGGGGATTATGTGTTGAACAATGGATCCTAAGAGGTGATAATGGAAAACTCTGCTCATATCATGACAG
Seq C2 exon
GACTTTGTCACCTTTAAGGATGTCGCCATCTTATTCTCCAGGGAGGAGTGGAGGCTCCTCAATAAGTCTCAGAAGCAACTGTGTGATGCTGGAGAACGTTACTTTGCACTTGTAACTTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058214:ENSRNOT00000088236:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGGTGTGAGAAATTGGTCA
R:
CCAATGAAGTTACAAGTGCAAAGT
Band lengths:
270-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]