RnoINT0009010 @ rn6
Intron Retention
Gene
ENSRNOG00000057545 | AC114363.1
Description
NA
Coordinates
chr3:8432105-8432593:-
Coord C1 exon
chr3:8432520-8432593
Coord A exon
chr3:8432316-8432519
Coord C2 exon
chr3:8432105-8432315
Length
204 bp
Sequences
Splice sites
5' ss Seq
CAGGAGCAG
5' ss Score
-3.23
3' ss Seq
TGCTGCTGTCCTCTTTTCCGCCC
3' ss Score
1.66
Exon sequences
Seq C1 exon
ATGGCAAGGACCACGGTGGGTAGCGTCGGCTCAGAGCCACTGGCAGCCCGGAGCCGCGGCCCTAGCAGGAGCAG
Seq A exon
GAGCAGGAGCAGCAGAGGTAGGAGCAGTGCGATACGCATGGCGGGACTCCGTGGCTGTGGAGGGCCCCGGGTCTCCCACCTCAGCAGGGAGGGGGCGGGACAGGCGGGGCATGGGGGCGGGGTCTAAGAGGGGCGTGACTACTACAGTGGGGCCCTTGCACCCTTCTTGGGCTCCTGTACGCTCTGCTGCTGTCCTCTTTTCCG
Seq C2 exon
CCCAGGCCCTAGATGTCCAGTGGCAGACACCTGCTCCAGACGCGGCCTGGGGTCCGCCTTCGCCGTGTGGACCTCAAAAGCCGTGGGTACAGAAGGGAGTATCCGGGGGCCATGGTGGATCGCTTGCACCATGAGCATTCATCTCACTCCTGGAATACTGACACCCAGGATTCGGGGCTCCCTGACCCTCAGCTGTGGACCCGGGAGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057545:ENSRNOT00000090574:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAGGACCACGGTGG
R:
TAGTCTCCCGGGTCCACAG
Band lengths:
285-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]