RnoINT0010113 @ rn6
Intron Retention
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190094854-190095591:+
Coord C1 exon
chr1:190094854-190094970
Coord A exon
chr1:190094971-190095473
Coord C2 exon
chr1:190095474-190095591
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATTTCTAATTATTTTGCTAGATT
3' ss Score
5.57
Exon sequences
Seq C1 exon
GAATACCAGCTCATGATAGGACTGAGAAACTGGATGTTCTGGATTGCCTATTTCTTCACCTTCTTCTGTTTGTATTTTATTAACATTATATTTATGTGCATTGTTTTATTTGTCAAG
Seq A exon
GTAAGTGTCTTTTTGATTCCAGCATGCAATGGCTAAACTTAAGGAGAGAGAGCAGGAGTGCAAAACCAACCCAACACTTAGGGTTGCTGGGAAGAGGGAACTTAGCCTTTGTGGACTTGGTTGTAGAATCTCAAAGGCTGCTTGTTCTCTCCACTGCCTTCAGTTCAAGTCAAGGTGGGAGGACTTTCTTCAAGAAATCAGTTGTTTGGTGCTGGAGATGTGACTTTAAAGATGCTTGCCTGACATAGGCAGATTTCTGCATAAATAGGGATTCATTCTGCATGCCTGTAATCGTAGCAGGCAGAGGAATGTCATCTTCAGCTACATAGAGAGTTCAAGGCCAGTCTGGGCTCTATAAGACCCAAAAGTATTAATTCTTTATCTCCATGAGAGAGTCACTAGGGTTGACCAGGAATGATAAAATATTTAAGGATATTTCTTTCTTTATGCCTTGTGATAACACATCGTAACTGACTAAACTGGATTTCTAATTATTTTGCTAG
Seq C2 exon
ATTGATCCTGCGCCAATATTCCAATACAATGACCCAATCCTTGTCTTCATCCTTTTGTTATTTTATGCCATCTCCTCGATATTCTTCAGTTTTATGATTAGCACATTGTTTAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505:ENSRNOT00000037026:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCTCATGATAGGACTGAGA
R:
AAACTGAAGAATATCGAGGAGATGGC
Band lengths:
206-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]